Pairwise Alignments

Query, 549 a.a., ribosomal large subunit pseudouridine synthase A (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 217 a.a., pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score =  136 bits (342), Expect = 9e-37
 Identities = 80/201 (39%), Positives = 124/201 (61%), Gaps = 17/201 (8%)

Query: 341 LEIVFEDEWLVVVNKPSGMLSVPGKEEET-DSVYHRVKAKYPEATGPMIVHRLDMATSGL 399
           L+I ++D  ++++NKPSG+LS PG+  ET D   +R+  ++PEA   ++VHRLD ATSG+
Sbjct: 14  LDIRYQDRDIIIINKPSGLLSNPGRAAETHDCAINRLLQRFPEA---ILVHRLDCATSGI 70

Query: 400 LLVAKTKEVHQHLQEQFISRSIKKRYVALLDRNGLNQQLEETGTINLPLCLNPLDRPRQM 459
           ++ A  K+   HL+ QF +R+ +K YVA ++  GL  Q  ++G I L +  +    P Q 
Sbjct: 71  MVFALNKKAESHLKTQFQNRTTEKYYVAEVE--GLMAQ--DSGKIELAMKPDSEQPPLQK 126

Query: 460 VSEEYGKPAVTEYRILNYSDKYIRIAFYPLTGRTHQLRVHAAHHQGLNYPILGDELYGKK 519
           ++E+ GKPA T + +L        +   P+TGRTHQLR+H    + L + ILGD+ YG +
Sbjct: 127 IAED-GKPATTYFEVLERRSNSTLVKLKPITGRTHQLRLHM---KALGHTILGDDFYGDE 182

Query: 520 -----ADRLYLHAEYIEFRHP 535
                A RL+LHAE++   HP
Sbjct: 183 AIIAAAPRLHLHAEHLSITHP 203