Pairwise Alignments

Query, 549 a.a., ribosomal large subunit pseudouridine synthase A (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 225 a.a., pseudouridylate synthase (RefSeq) from Shewanella loihica PV-4

 Score =  134 bits (338), Expect = 3e-36
 Identities = 80/201 (39%), Positives = 117/201 (58%), Gaps = 16/201 (7%)

Query: 341 LEIVFEDEWLVVVNKPSGMLSVPGKEEET-DSVYHRVKAKYPEATGPMIVHRLDMATSGL 399
           LEI+ ED+ ++VVNKPSG+LSVPG++    DSVY RV   +P A    IVHRLDMATSG+
Sbjct: 14  LEILHEDKDILVVNKPSGLLSVPGRDPAYYDSVYTRVLRDHPNA---QIVHRLDMATSGI 70

Query: 400 LLVAKTKEVHQHLQEQFISRSIKKRYVALLDRNGLNQQLEETGTINLPLCLNPLDRPRQM 459
           ++VA  +   + L+ QF  R   K Y A +          E G+++ PL  +  +RP+Q 
Sbjct: 71  IVVALRRSAERELKRQFRDRETHKIYYARV----AGHLKAEQGSVDYPLICDWPNRPKQK 126

Query: 460 VSEEYGKPAVTEYRILNYSDKYIRIAFYPLTGRTHQLRVHAAHHQGLNYPILGDELYG-- 517
           V  + GK + T + +++ + +   +   P+TGR+HQLRVH      + +PILGD  Y   
Sbjct: 127 VDHQIGKASKTLFEVISRAKRSTLVKLTPITGRSHQLRVHM---MAIGHPILGDNFYADP 183

Query: 518 ---KKADRLYLHAEYIEFRHP 535
              + A RL LHA+ +   HP
Sbjct: 184 LAKRLAPRLLLHAQSLSLTHP 204