Pairwise Alignments

Query, 549 a.a., ribosomal large subunit pseudouridine synthase A (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 228 a.a., RNA pseudouridine synthase from Klebsiella michiganensis M5al

 Score =  141 bits (355), Expect = 3e-38
 Identities = 86/224 (38%), Positives = 131/224 (58%), Gaps = 25/224 (11%)

Query: 331 LSPQAHRKEELEIVFEDEWLVVVNKPSGMLSVPGKEEET-DSVYHRVKAKYPEATGPMIV 389
           ++P  H   E++I+++DE L++++KP+G+LS+ GK     DSV++R+  ++P   G  + 
Sbjct: 9   IAPPCHA--EIDILYQDEHLLLIDKPAGLLSLSGKNPRNLDSVHYRLVQQFP---GCALA 63

Query: 390 HRLDMATSGLLLVAKTKEVHQHLQEQFISRSIKKRYVALLDRNGLNQQLEETGTINLPLC 449
           HRLD  TSGL+++A+ K ++  L +QF  R++ K Y ALL         ++ GTI+ P+ 
Sbjct: 64  HRLDFGTSGLMVIARNKVINAALCQQFSQRAVSKVYSALL----CGHLADDEGTIDAPIA 119

Query: 450 LNPLDRPRQMVSEEYGKPAVTEYRI---LNYSDK--YIRIAFYPLTGRTHQLRVHAAHHQ 504
            +P   P   +    GKPA + YR+   L Y D     R+   P TGRTHQLR+H    Q
Sbjct: 120 KDPALFPLMTICPRRGKPARSGYRVVERLRYQDSVPVTRVQLTPETGRTHQLRIHC---Q 176

Query: 505 GLNYPILGDELYG-------KKADRLYLHAEYIEFRHPVYGDII 541
            L +PILG +LYG       ++A RL LHA  + F HPV G+ I
Sbjct: 177 QLGHPILGCDLYGGLLLPGTEQAPRLMLHASELHFMHPVSGERI 220