Pairwise Alignments

Query, 599 a.a., putative surface layer protein, with cytochrome c domain (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 330 a.a., YncE family protein from Ralstonia solanacearum GMI1000

 Score = 51.6 bits (122), Expect = 5e-11
 Identities = 40/144 (27%), Positives = 61/144 (42%), Gaps = 4/144 (2%)

Query: 28  PDRLFLADSGKSLFVTNRAGNELIKMSSDGQKAEQKVTLSSPVNAMTQDPSGNLWVVCDG 87
           P  L      KSL V N  GNEL+ +     K +Q+V        +   P    W +  G
Sbjct: 63  PHHLIATPDEKSLIVANAVGNELVFLDPVTGKIQQRVPRIDDPYQIGFSPDQK-WFLTTG 121

Query: 88  NT---GMMYELDGKKLSVQSKTKSGATPSDILYSPVSKSLWVTQRFNNELWEIDPATRKV 144
           N      +Y  DG  L++  +     TPS I ++  SK  +VT + +NE+  ID  T+ V
Sbjct: 122 NRLDRVDIYRWDGHALTIAKQLPLAKTPSHIAFTADSKVAFVTLQDSNEVVAIDLPTQTV 181

Query: 145 KTKIAVGREPVAMAPFAGDSCLLI 168
             ++  G  P  +        LL+
Sbjct: 182 MWRMTSGAAPAGVWVTTDQKYLLV 205



 Score = 35.8 bits (81), Expect = 3e-06
 Identities = 18/43 (41%), Positives = 25/43 (58%)

Query: 112 PSDILYSPVSKSLWVTQRFNNELWEIDPATRKVKTKIAVGREP 154
           P D+  +   K LWVT R+   +  +D A+RKV  +I VGR P
Sbjct: 276 PDDMELTADGKQLWVTCRWAKRVAIVDVASRKVVEEIKVGRSP 318



 Score = 33.1 bits (74), Expect = 2e-05
 Identities = 46/197 (23%), Positives = 69/197 (35%), Gaps = 45/197 (22%)

Query: 109 GATPSDILYSPVSKSLWVTQRFNNELWEIDPATRKVKTKIAVGREPVAMAPFAGDSCLLI 168
           G  P  ++ +P  KSL V     NEL  +DP T K++ ++    +P  +         L 
Sbjct: 60  GKEPHHLIATPDEKSLIVANAVGNELVFLDPVTGKIQQRVPRIDDPYQIGFSPDQKWFLT 119

Query: 169 ANN------LPEMSSTAYPIAVQLDIVDVPSKKVTGRIMLPNGATDAKSVAVDKNQTYAY 222
             N      +      A  IA QL +   PS                  +A   +   A+
Sbjct: 120 TGNRLDRVDIYRWDGHALTIAKQLPLAKTPS-----------------HIAFTADSKVAF 162

Query: 223 VTHLIARYQLPTNQLDRGWMATNTLSIIDLKAGKLLTSVLLDTPQKGAANPWSVIVTPDD 282
           VT                   +N +  IDL      T  ++     GAA P  V VT D 
Sbjct: 163 VT----------------LQDSNEVVAIDLP-----TQTVMWRMTSGAA-PAGVWVTTDQ 200

Query: 283 KQIIVAAAGSQELVRID 299
           K ++V   G+  +  ID
Sbjct: 201 KYLLVGMTGADFVEVID 217



 Score = 30.0 bits (66), Expect = 2e-04
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 273 PWSVIVTPDDKQIIVAAAGSQELVRIDRI 301
           P  +I TPD+K +IVA A   ELV +D +
Sbjct: 63  PHHLIATPDEKSLIVANAVGNELVFLDPV 91