Pairwise Alignments

Query, 183 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 247 a.a., RNA polymerase sigma-70 RpoE type from Marinobacter adhaerens HP15

 Score = 83.2 bits (204), Expect = 3e-21
 Identities = 49/184 (26%), Positives = 90/184 (48%), Gaps = 7/184 (3%)

Query: 3   PYNEREVLKLLQEESTQRKGFELIVAQYSEQLYWQIRRMVLSHEDANDLLQNTFIKAWTN 62
           P ++ ++  + +  +  R  F+L+V +Y  ++   I R V   ++  DL Q TF+KA+  
Sbjct: 55  PDSQTDLQLVRKVRNGDRAAFDLLVVKYQSRVASIISRYVYDSQEVMDLTQETFVKAFRA 114

Query: 63  IDYFRAEAKLSTWLYRIALNECLTFLNRQRATTTVAIDDPEA-------AIVQKLESDPY 115
           I+ FR ++   TWLYRIA+N    +L  +      + D  EA        +      +  
Sbjct: 115 IERFRGDSAFYTWLYRIAVNTAKNYLESRGRRPQGSADSAEAENFDDGSRLRDTASPERL 174

Query: 116 YSGDQVQMLLQKALLTLPEKQRMVFNLKYYQEMKYEEMSEIFGTSVGALKASYHHAVKKI 175
              +Q+Q  L KA+  LPE+ R  F L+ Y  + YE+++ I    +G +++    A   +
Sbjct: 175 LQREQLQKELNKAIAQLPEELRSAFLLREYDGLSYEDIAGILECPIGTVRSRIFRARDAV 234

Query: 176 EKFL 179
           ++ L
Sbjct: 235 DRHL 238