Pairwise Alignments

Query, 1605 a.a., conserved hypothetical protein, putative DNA helicase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1589 a.a., DNA helicase from Pseudomonas fluorescens FW300-N2E3

 Score =  473 bits (1217), Expect = e-137
 Identities = 393/1297 (30%), Positives = 622/1297 (47%), Gaps = 135/1297 (10%)

Query: 384  RRLLDLSLRNNLLNIRITKNTLQLIPANLACLEDALAEGDEFRILHRPAEWENPAMEFGI 443
            + LLD+ LRN +LN R +  TL ++        D L+E   F +L+R    +   M F  
Sbjct: 14   KELLDIGLRNTMLNFRASAKTLAVV--------DELSES-VFHLLYR----QEKTMSFSP 60

Query: 444  YS----------SIPESDPIADFVNSEL---------------------------SQKRL 466
             +          ++PE +   D    EL                           +  RL
Sbjct: 61   MARQKSAALAKIALPEGEDAQDIATDELLLLELDGLGELSAVDDEVDESGRARRHTDTRL 120

Query: 467  RFYLPENDLGKALTHLYRSSRTSIEENGANTLYLALGLLKWYETPSSERPRYAPILLLPV 526
            +  L E  L   L  ++  +R  +EE G NTL+LALG L WYE  SSE  R AP++LLPV
Sbjct: 121  QTALDEERLFLQLLRIHSEARAFVEEQGVNTLFLALGFLHWYEADSSETLRKAPLMLLPV 180

Query: 527  EIIRKSAAKGYVIRSREEETMMNITLLEMLRQNFGISVPGLDPLPT--DESGVNVKLIYS 584
             + R  A   + ++   +E M N++L+  L+ +FG+ +   +      D +  ++   Y+
Sbjct: 181  TLERSGAKDAFKLKYSGDELMPNLSLIAKLKTDFGLDLAACEFSEDRFDAAEGSLDSFYA 240

Query: 585  IIRHCIKNQRKWDVE-EQAILGIFSFNKFIMWNDIHNNA-PKLTQ---NKIVSSLINGKI 639
             +   +  Q +W V   +A LG FSF KF+M+ D+   + P+  Q   + +++ L+    
Sbjct: 241  EVTDLVSKQPRWKVSTNEAALGFFSFGKFLMFKDLDPKSWPQDHQPDAHPVINRLLGAGF 300

Query: 640  EWNAITEEMDASYMDRQLSPADIVLPIIADSSQLEAIYEAVHDKTFILHGPPGTGKSQTI 699
                     D + +D  L P ++     ADSSQ EAI E       ++ GPPGTGKSQTI
Sbjct: 301  GDQRPCYAEDVN-IDSVLKPGEVRFVKDADSSQTEAILEVREGANLVIQGPPGTGKSQTI 359

Query: 700  TNIIANALYKGKRVLFVAEKMAALSVVQNRLAAIGLAPFCLEIHSNKTKKSTVISQLKET 759
            TNIIA  + + K VLFVAEKMAAL VV+ RL    L    LE+HS+K+ K +VI +L  T
Sbjct: 360  TNIIAELIAQKKTVLFVAEKMAALEVVKRRLDECHLGDAVLELHSHKSTKQSVIKELGRT 419

Query: 760  TEIIRRTPPEEFKKEAERLLKLRTELNKYIEALHKEY-PFGLSLYDAIIHY----QSTDV 814
             E   R   +  + +   L +L+  LN+Y EA+       G+   + +  Y    +S  V
Sbjct: 420  LEQ-GRPLTKVGEDDLANLAELQGNLNRYCEAVSAPVGASGMDFVEVLGRYLKLKRSYGV 478

Query: 815  EPCFDIPSSYLDDLDKDRFSHWEDAIESLVSTANACGHPHLHPLTGISIREYSSAIKE-- 872
             P     +  +     D+       IE L       G P  +P  G S R Y S I++  
Sbjct: 479  LPTIAF-APMVSWTQTDQLKR-RQLIEELTLHIKEMGRPDQNPFWG-SKRTYFSPIEQNN 535

Query: 873  --EASQTLATFIGLLTAIQSKLPVFSALLEDTDIHPTRKDFDIITAIIRKILEIPELTPE 930
              +A Q  +  +  L A    L +   L +      T  D  +I    R+  E P L   
Sbjct: 536  ANDALQQASAHLAALDAAAKALSIRLMLTQPA----TLADVAVICRAARRAAEAPRLQGV 591

Query: 931  LLTTPLLNETLEEYRKVTKHGRKRDEIKAE-----IENGFTKEVLKINAGPMLA---EWN 982
             L+T       +   ++   G++    KA      IE  + +++L++    +LA   +W 
Sbjct: 592  ELSTGDWQLRRDAIHELLDAGQRMSTCKANHGTQLIEAAWEQDLLEVRQN-LLAYGDKWW 650

Query: 983  RVSAQWFLPRYFGQRKIKKAIRPYALQPVEPETVQPLLHQVIRYQEELDFTDRYTAKLPS 1042
            +V    F  RY   +   + +    L     E +  L+  V+ YQ+ L    ++     +
Sbjct: 651  KV----FSGRYRAAKARLQGLVQGTLPGSNTEQLT-LVDSVLAYQQSLKVYHQHEGLGSA 705

Query: 1043 LFGRFGRDE--EWDIIDQIIHEVSSLHSLLLSYSKDVAKTSRIKQNLALQLTEGIRTFRD 1100
            LFG   + +  +W +++++   V  L+       +D+   +         + +GI  F  
Sbjct: 706  LFGAQWQRQKSDWAVLERVSAWVVQLY-------EDLGNGN---------VPQGIIAFLA 749

Query: 1101 IHSHS--LNE-LHQLADTLTATEQRLSTTLGI------TVETLYTNSADWIGIALQQAAT 1151
             H+ +  L E +  + + L   +Q L   L +      T +TL +     +G  LQ    
Sbjct: 750  GHTDASGLGETVSDIEEHLAGLDQALLAGLEVIGMQDDTAQTLRSLDLPALGARLQ---L 806

Query: 1152 WKENLDKLKDWYQWLQSYNKLNELGIGFIAEEYKEKNIPTDLLTSSFCKSFYQAVIHYII 1211
            W+ +L  L    ++     ++++  +  +       + P D L +    S+Y  ++    
Sbjct: 807  WQASLGALYQMARFNVLSGEVHQAQLDELLNIALRSDAP-DQLPAILDFSWYSGLVQKAY 865

Query: 1212 AKEPTLELFNGKIFNDIIAKYKQVSANFEDITKKELFARLASNIPSFTHEAIQSSEVGIL 1271
            A++P L+ F+       IAK+K + A   +  +  L  ++  ++P+      Q  E+ IL
Sbjct: 866  AEKPALQQFDRIKHEHQIAKFKTLDAASLNHAQTFLARQVWEHMPNVN----QPGEMAIL 921

Query: 1272 QKNIRNNARGISIRKLFDQIPTLLSRMCPCMLMSPISVAQYIDTDADKFDLIVFDEASQM 1331
            +  +    R I IR+L D+    + ++ P  +MSP+S+A ++      FD++VFDEASQ+
Sbjct: 922  RAELNKKRRHIPIRQLIDKAGRAIQQIKPVFMMSPMSIANFLPPGKLAFDVVVFDEASQV 981

Query: 1332 PTYEAVGAIARGKNVVIVGDPKQMPPTSFFSVN-TIDEDNIEMEDLESILDDCLALSIPS 1390
               +A GAI RGK VV+VGD +QMPP+  FS +   D+DN    D+ESIL    A     
Sbjct: 982  KAVDAFGAILRGKQVVVVGDTRQMPPSDLFSRDIAADDDNEATADIESILSLFKAAGSQE 1041

Query: 1391 KYLLWHYRSKHESLIAFSNSEYYDNKLMTFPSPDNIESKVRMVAVD----GYYDKGKSRQ 1446
            +YL WHYRS+HESLIA SN E+YD+KL+ FPS        + V+ D      YD+G++R 
Sbjct: 1042 RYLRWHYRSRHESLIAVSNVEFYDSKLVVFPSAGQ-HPHAKGVSFDYLPQALYDRGRTRT 1100

Query: 1447 NQAEAQAVVDEIARR-LRSEELRKKSVGVVTFSVVQQALIEDLLSDLFIFHPELETF-AL 1504
            N+ EA+AV   + +  L + EL   S+ V  FSV Q+ LI   +  L    P+ E F   
Sbjct: 1101 NKDEAKAVAQAVMKHALETPEL---SLAVAAFSVPQRDLINIEVELLRRKTPQAEAFFTA 1157

Query: 1505 ECEEPLFIKNLENVQGDERDVILFSVGYGPDAEGRVSMNFGPLNRAGGERRLNVAVSRAR 1564
            +  E  F+KNLEN+QGDERDVI  S+GYG +  GR++  FGPLN+ GG RRLNV ++RA+
Sbjct: 1158 QGSERFFVKNLENIQGDERDVIFISIGYGRNESGRIAREFGPLNKDGGHRRLNVLITRAK 1217

Query: 1565 YEMIIFSTLRSDMIDLNRTSSIGVAGLKRFLEYAEKG 1601
              M +F   R D ++++ T+  GV  LK FL+YAE G
Sbjct: 1218 LAMRVFCNFRGDELEIDATAKHGVRALKNFLKYAETG 1254