Pairwise Alignments

Query, 1605 a.a., conserved hypothetical protein, putative DNA helicase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 578 a.a., DNA helicase from Pseudomonas fluorescens FW300-N2E3

 Score = 64.7 bits (156), Expect = 3e-14
 Identities = 62/259 (23%), Positives = 119/259 (45%), Gaps = 26/259 (10%)

Query: 1320 FDLIVFDEASQMPTYEAVGAIARGKNVVIVGDPKQMPPTSFFSVNTIDEDNIEMEDLESI 1379
            FD ++FDEASQ+    A+ A+ + K  + +GD KQ+PP    S + + ++++ +    + 
Sbjct: 300  FDTVIFDEASQITLPLALMAMRKAKRFIFIGDQKQLPPV-MLSRSILSDESMSIFGRLTS 358

Query: 1380 LDDCLALSIPSKYLLWHYRSKHESLIAFSN--SEYYDNKLMTFPSPDNIESKVRMVAVDG 1437
             D    + +   Y +  + ++  S   + N       NKL  F S D      ++   D 
Sbjct: 359  QDADHTVMLEDTYRMNQWLTEWPSKAYYGNRLRAAGSNKLRRFQSCDLNGPLAQVFDPDA 418

Query: 1438 ------YYDKGKSRQNQAEAQAVVDEIARRLRSEELRKKSVGVVTFSVVQQALIEDLLSD 1491
                    D G   +N  +A+ VV ++ +  +++ L    +G+V+    Q   I +LL  
Sbjct: 419  CAVFIPTADSGAKNRNFRDAERVV-QLCQTAKAQGLSLHEIGIVSPYRAQGRAIRNLL-- 475

Query: 1492 LFIFHPELETFALECEEPLFIKNLENVQGDERDVILFSVGYGPDA-EGRVSMNFGPLNRA 1550
                   ++ F  +  + +    +E +QG ER++I+ S+  G +   G V+  F      
Sbjct: 476  -------IKCFGRDAAKMVVADTVERMQGQERELIILSLASGDEVFIGAVAEFFFQ---- 524

Query: 1551 GGERRLNVAVSRARYEMII 1569
                RLNV+++RA  ++II
Sbjct: 525  --PERLNVSITRAMTKLII 541



 Score = 30.8 bits (68), Expect = 4e-04
 Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 2/88 (2%)

Query: 646 EEMDASYMDRQLSPAD-IVLPIIADSSQLEAIYEAVH-DKTFILHGPPGTGKSQTITNII 703
           E  D ++ +  L  A+   L    +  Q +A+  A+  ++   + GPPGTGK++ +  I 
Sbjct: 156 ESPDITFNEADLDHAEKFALDEGCNERQAQAVGLALGAEQVACIQGPPGTGKTRALALIA 215

Query: 704 ANALYKGKRVLFVAEKMAALSVVQNRLA 731
              + +G+RV   +    A++   +++A
Sbjct: 216 QLLVARGERVFVTSHTHMAINNALSKIA 243