Pairwise Alignments

Query, 1605 a.a., conserved hypothetical protein, putative DNA helicase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1861 a.a., putative superfamily I DNA and RNA helicase protein (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  267 bits (682), Expect = 1e-74
 Identities = 180/553 (32%), Positives = 275/553 (49%), Gaps = 40/553 (7%)

Query: 1062 EVSSLHSLLLSYSKDVAKTSRIKQNLALQLTEGIRTFRDIHSHSLNELHQLADTLTATEQ 1121
            ++  L S +    +   +   IK   A  + +      DIH  S  E ++ +   T   +
Sbjct: 993  DIRLLASRVADRGQLAVQAEAIKAERATLIADTASLLEDIHLASRRE-YEASQIGTVPIE 1051

Query: 1122 RLSTTLGITVETLYTNSADWIGIALQQAATWKENLDKLKDWYQWLQSYNKLNELGIGFIA 1181
            RL  +LG                       W  + ++L  W  +    ++   LG G + 
Sbjct: 1052 RLLVSLG----------------------EWAASGEQLFKWVAYRDRADRGRALGCGDVV 1089

Query: 1182 EEYKEKNIPTDLLTSSFCKSFYQAVIHYIIAKEPTLELFNGKIFNDIIAKYKQVSANFED 1241
               ++  +    +  +F  ++Y+A+   ++  +P L  F+G +   ++  +  +      
Sbjct: 1090 MRLEDGRLTPSEVLPAFEMAYYEAIYAELVRSDPDLGRFDGTLHGRLVRDFVDLDRQRIA 1149

Query: 1242 ITKKELFARLASNIPSFTHEAIQSSEVGILQKNIRNNARGISIRKLFDQIPTLLSRMCPC 1301
            +   E+       +P     AI    +G+L+  ++     + IRKL ++    +  + P 
Sbjct: 1150 LAGVEVVQAHHKRVPPRDGSAI--GPLGVLRAEMQKKRGHMPIRKLMERAGQAVQALKPV 1207

Query: 1302 MLMSPISVAQYIDTDADKFDLIVFDEASQMPTYEAVGAIARGKNVVIVGDPKQMPPTSFF 1361
             +MSP+SVAQ++     +FDL+V DEASQ+   +A+GAIAR + VV+VGDPKQ+PPT+FF
Sbjct: 1208 FMMSPLSVAQFLAPGVFEFDLLVMDEASQIQPVDALGAIARARQVVVVGDPKQLPPTAFF 1267

Query: 1362 SVNT------IDEDNIEMEDLESILDDCLALSIPSKYLLWHYRSKHESLIAFSNSEYYDN 1415
            S  T       D D   + D+ESIL    A  +P++ L WHYRSKH+SLIA SN ++Y+ 
Sbjct: 1268 SKITGNGSEDDDSDGGRVADIESILGLFTARGLPTRMLRWHYRSKHQSLIAVSNRQFYEG 1327

Query: 1416 KLMTFPSPDNIESKVRM---VAVDGYYDKGKSRQNQAEAQAVVDEIARRLRSEELRKKSV 1472
            KL   PSP   E+ + +      +G +D G +R N+ EA+ V   I    R  E    S+
Sbjct: 1328 KLFIVPSPYTAEAGMGLRFHYISEGLFDAGGTRTNKVEAKIVARAIIDHAR--ECPHLSL 1385

Query: 1473 GVVTFSVVQQALIEDLLSDL-FIFHPELET-FALECEEPLFIKNLENVQGDERDVILFSV 1530
            GV  FS  Q+  I D L  +     P+ E  F     EP F+KNLENVQGDERDVI  SV
Sbjct: 1386 GVAAFSAAQRRAILDQLELMRRSLPPDTEAFFQAHPAEPFFVKNLENVQGDERDVIFISV 1445

Query: 1531 GYGPDAE-GRVSMNFGPLNRAGGERRLNVAVSRARYEMIIFSTLRSDMIDLN-RTSSIGV 1588
            GYGP    GR  M FGPL   GGERRLNV +SRA+    +FS++  + I+ +   +  GV
Sbjct: 1446 GYGPTTPGGRPPMRFGPLGSEGGERRLNVLISRAKQRCEVFSSITDEDIEPDFAATRKGV 1505

Query: 1589 AGLKRFLEYAEKG 1601
               + FL YA  G
Sbjct: 1506 LAFRMFLHYARTG 1518



 Score =  217 bits (553), Expect = 9e-60
 Identities = 190/628 (30%), Positives = 293/628 (46%), Gaps = 29/628 (4%)

Query: 386 LLDLSLRNNLLNI-RITKN--TLQLIPANLACLEDALA-EGDEFRILH----RPAEWENP 437
           LLDLS RN LLN+ R  K+  T++++    A +   L  EG  F  +     R  E E  
Sbjct: 34  LLDLSARNRLLNMPRSGKSARTIEIVDEKSAQIFRLLVREGKPFTFVAGKSARTEEAEGD 93

Query: 438 AMEFGIYSSIPESDPIADF--VNSELSQKRLRFYLPENDLGKALTHLYRSSRTSIEENGA 495
           A  + I       D IAD   V S     RL+  L    L K L  LY  +RT  EE G 
Sbjct: 94  AETYEITDLAQPDDDIADDRGVFSRHVDTRLQTRLTPQGLQKRLLELYFDARTLEEEQGV 153

Query: 496 NTLYLALGLLKWYETPSSERPRYAPILLLPVEIIRKSAAKGYVIRSREEETMMNITLLEM 555
           N LYL LG LKW +  ++   RYAP+LL+PV + R +AA+ + +R R+E+   N++L   
Sbjct: 154 NILYLTLGTLKWVDPANAANTRYAPLLLIPVLLDRGNAAEKFKLRVRQEDFASNLSLETF 213

Query: 556 LRQNFGISVPGLDPLPTDESGVNVKLIYSIIRHCIKNQRKWDVEEQAI-LGIFSFNKFIM 614
           L +  GI +P  +   + E        +  I   +  +  W V+   I LG FSF KF+M
Sbjct: 214 LDRVHGICLPAFEATDSFEP----ISYFEGIADAVAGKPDWAVQTDDIALGFFSFAKFLM 269

Query: 615 WNDIHNNA----PKLTQNKIVS-SLINGKIEWNAITEEMDASYMDRQLSPADIVLPIIAD 669
           + D+         +++   ++  +L +G    + +  E DA  +D  + P++++  + +D
Sbjct: 270 YRDLDPETWPAHARISDRPLIRCALADGFTGSDGMIPE-DAK-IDPFIPPSEMLHIVDSD 327

Query: 670 SSQLEAIYEAVHDKTFILHGPPGTGKSQTITNIIANALYKGKRVLFVAEKMAALSVVQNR 729
           SSQ  A++E    +  ++ GPPGTGKSQTI NIIA A+  GK VLFVAEKMAAL VV+ R
Sbjct: 328 SSQALAVHEVRRGRDMVIQGPPGTGKSQTIANIIAAAIADGKTVLFVAEKMAALEVVKRR 387

Query: 730 LAAIGLAPFCLEIHSNKTKKSTVISQLKETTEIIRRTPPEEFKKEAERLLKLRTELNKYI 789
           L A G+   CLE+HSNK  K  ++ +L+ T   +     ++      RL +LR  LN + 
Sbjct: 388 LDATGVGDACLELHSNKANKRALLDELRRTWH-LGAPKIQDAGTLYTRLAELRDGLNAHA 446

Query: 790 EALH-KEYPFGLSLYDAI---IHYQSTDVEPCFDIPSSYLDDLDKDRFSHWEDAIESLVS 845
             LH      GLS Y  I   +  +     P  DI          D ++     +  L  
Sbjct: 447 ARLHCCHTTAGLSAYQVIGQLVRLRQAGERP-NDIVLETPGGWTVDGYAERHAVLAELAE 505

Query: 846 TANACGHPHLHPLTGISIREYSSAIKEEASQTLATFIGLLTAIQSKLPVFSALLEDTDIH 905
                G P  H  +G+ +   +    E  +   A+    L A+ +K    + +LE     
Sbjct: 506 RVKEIGKPSEHVWSGVGLASITPMEVERFTGRFASLAERLEALDAKQADMATMLECERAA 565

Query: 906 PTRKDFDIITAIIRKILEIPELTPELLTTPLLNETLEEYRKVTKHGRKRDEIKAEIENGF 965
                   I    R I   PEL+   L++    E  +    +  +G++  ++KAE+   F
Sbjct: 566 TLDALLPSIETAAR-IAGAPELSESALSSSAWQEEYDAISALLVNGKRYAQLKAELATVF 624

Query: 966 TKEVLKINAGPMLAEWNRVSAQWFLPRY 993
           T+   + + G   A   R+   + L  +
Sbjct: 625 TQAAWETDTGAARATLARLPHSFSLAAF 652