Pairwise Alignments

Query, 1605 a.a., conserved hypothetical protein, putative DNA helicase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 633 a.a., IGHMBP2 family helicase from Methanococcus maripaludis S2

 Score = 70.1 bits (170), Expect = 7e-16
 Identities = 89/348 (25%), Positives = 153/348 (43%), Gaps = 72/348 (20%)

Query: 1247 LFARLASNIPSFTHEAI-QSSEVGILQKNIRNNARGISI--RKLFDQIPTLLSRMCPCML 1303
            +F++L  +I     E I Q ++  I  +NI      +    +KL D I +        ++
Sbjct: 309  IFSKLNKDIRGIPKETIKQMADWVICSENIAKTKENVQKFEKKLIDDIISTSD-----VV 363

Query: 1304 MSPISVAQYIDTDADKFDLIVFDEASQMPTYEAVGAIARGKNVVIVGDPKQMPPTSFFSV 1363
            ++  S+A     +  KFD+ V DE SQ     ++  I R + ++I GD KQ+PP      
Sbjct: 364  VATNSMAGSEILEDYKFDIAVIDEGSQSTEPSSLIPIVRSRKLIIAGDHKQLPP------ 417

Query: 1364 NTIDEDNIEMEDLESILDDCLALSIP--SKYLLWHYRSKHESLIAFSNSEYYDNKLMTFP 1421
             T+  D +E   L+  L + +    P  SK L   YR  +E ++ FSN  +Y+NKL+   
Sbjct: 418  -TVLSDELE---LKKTLFERMIQEHPEFSKILQVQYR-MNEKIMEFSNEMFYENKLIAHE 472

Query: 1422 S---------PDNI---------ESKVRMVAVDGYYDKG--KSRQNQAEAQAVVDEIARR 1461
            S          +N+         E  ++ + VDG   +   KS  N  EA+ V+ EI  +
Sbjct: 473  SVKSQNLLEIVENVSNEDKDIINEKPLQFINVDGEEKQNSFKSSYNVEEAEKVL-EIVSK 531

Query: 1462 LRSEELRKKSVGVVTFSVVQQALIEDLLSDLFIFHPELETFALECEEPLFIKNLENVQGD 1521
            L+  E+    V V+T    Q   I  +L+                 + + +K+++  QG 
Sbjct: 532  LQKYEI---PVSVITPYDAQVKYISKMLN----------------TDKIDVKSVDGFQGR 572

Query: 1522 ERDVILFSVGYGPDAEGRVSMNFGPLNRAGGERRLNVAVSRARYEMII 1569
            E +VI+ S            +    +      +RLNVAV+RA+ ++I+
Sbjct: 573  ENEVIVISF-----------VRTSKMGFLKDLKRLNVAVTRAKRKLIV 609



 Score = 44.3 bits (103), Expect = 4e-08
 Identities = 47/224 (20%), Positives = 99/224 (44%), Gaps = 30/224 (13%)

Query: 568 DPLPTDESGVNVKLIYSIIRHCIKNQRKW---DVEEQAILGIFSFNKFIMWNDIHNNAPK 624
           +PL +D  G  +++  + +   ++   KW   D+     +   +F + +   D  N+   
Sbjct: 86  NPLQSDLLGTVIEIGSNHVDVSMEIVPKWALNDIRIDLYVNDVTFKRMLNALDKFNS--- 142

Query: 625 LTQNKIVSSLINGKIEWNAITEEMDASYMDRQLSPADIVLPIIADSSQLEAIYEAVHDKT 684
            T N+++  +++      + T E+   ++D +L+             Q EA+ EA+  + 
Sbjct: 143 -TDNRLIDIILSVDSPQKSKTTEV--RFLDYRLN-----------EYQKEAVLEALAARD 188

Query: 685 -FILHGPPGTGKSQTITNIIANALYKGKRVLFVAEKMAALSVVQNRLAAIGLAPFCLEIH 743
            +++HGPPGTGK+ TI+ +I     +  +V+  A+   A+  + + ++           H
Sbjct: 189 LYLIHGPPGTGKTSTISEVILQEALRKNKVIATADSNIAVDNILSNISKHESFKIVRIGH 248

Query: 744 SNKTKKSTVISQLKETTEIIRRTPPEEFKKEAERLLKLRTELNK 787
            ++  K  +   L+  T+I               L+KL+TEL K
Sbjct: 249 PSRISKKLIKYSLQ--TKITEH-------PNYSTLVKLKTELQK 283