Pairwise Alignments

Query, 1605 a.a., conserved hypothetical protein, putative DNA helicase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1559 a.a., putative DNA helicase related protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  425 bits (1092), Expect = e-122
 Identities = 379/1274 (29%), Positives = 582/1274 (45%), Gaps = 107/1274 (8%)

Query: 384  RRLLDLSLRNNLLNIRITKNTLQLIPANLACLEDALAEGDEFRILHRPAEWENPAMEFGI 443
            R+LLD   RN L+++               CL       D+   + R    +      G 
Sbjct: 15   RKLLDTGTRNRLVHVNRANTRAN-------CLNIINERADDVFAILRSQSRKMRFKAMGK 67

Query: 444  YSSIPESDPIADFVNSELSQ--KRLRFYLPENDLG-----KALTHLYRSSRTSIEENGAN 496
              S    D +      E+ +   RL     E  LG     + L  L  +++T+ EE G N
Sbjct: 68   DKSSEGQDMLLALPEPEIPEGADRLTDLFLETPLGPEAQARRLLRLATNAKTAEEEQGLN 127

Query: 497  TLYLALGLLKWYETPSSERPRYAPILLLPVEIIRKSAAKGYVIRSREEETMMNITLLEML 556
             LYLA+G L+W E+PSSE  R AP++LLPV++IR      Y I  R+++   N+ L + L
Sbjct: 128  ILYLAMGFLQWRESPSSETLREAPLILLPVQLIRNERTSTYDILCRDDDIATNLPLQQRL 187

Query: 557  RQNFGISVP----GLDPLPTDESGVNVKLIYSIIRHCIKNQRKWDVEEQAI-LGIFSFNK 611
            R +FGIS+P    G D  P+D         ++ +R  I  Q  W ++   + LG FSF K
Sbjct: 188  RTDFGISLPEIEEGEDWKPSD--------YFAQVRDAISGQPGWALDADGMQLGFFSFAK 239

Query: 612  FIMWNDIHNNA---PKLTQNKIVSSLINGKIEWNAITEEMDASYMDRQLSPADIVLPIIA 668
             +M  D+           +N ++  L+    E        D   +D  L PA+IV  I A
Sbjct: 240  LLMHRDLDTATWPEGAFAENDLLRGLLTEGFEAPTPIFGPD-DRLDDILDPAEIVQVIDA 298

Query: 669  DSSQLEAIYEAVHDKTFILHGPPGTGKSQTITNIIANALYKGKRVLFVAEKMAALSVVQN 728
            D+SQ + I E     + ++ GPPGTGKSQTITN+IA A + GK VLFVAEKMAALSVV +
Sbjct: 299  DASQTKVIEEVRRGASLVVQGPPGTGKSQTITNLIAAAAHDGKTVLFVAEKMAALSVVHD 358

Query: 729  RLAAIGLAPFCLEIHSNKTKKSTVISQLKETTEIIRRTPPEEFKKEAERLLKLRTELNKY 788
            RL   GL   CLE+HS    K  +  +L  T     +  P     +  RL   R  LN+ 
Sbjct: 359  RLVRAGLRDICLELHSRTANKKALAQELGRTLMASAQALPGT--PDPARLRSTRDNLNRI 416

Query: 789  IEALHKEYPF-GLSLYDAIIHY----QSTDVEPCFDIPSSYLDDLDKDRFSHWEDAIESL 843
               LH   P  G + + AI        +    PC  IP   LD+LD+ +      A+   
Sbjct: 417  TSLLHDPLPSSGDTPFRAIAEICGFIGNGAPPPC--IPLEGLDELDQCKRDAACAALSKY 474

Query: 844  VSTANACGHPHLHPLTG---ISIREYSSAIKEEASQTLATFIGLLTAIQSKLPVFSALLE 900
                   G P  HP  G   + ++    A  E+     A+ I +L +   +L   + L  
Sbjct: 475  AEALERAGPPEQHPFRGTGALDLQPTDLARLEDELTGAASEIEILLSEGQRLADATGLAA 534

Query: 901  DTDIHPTRKDFDIITAIIRKILEIPELTPELLTTPLLNETLEEYRKVTKHGRKRDEIKAE 960
               +     + D + A +  +  IP+   + +     + +     +    G    + K  
Sbjct: 535  PNSLG----EVDALGAALSALAGIPQGAKDWIAPLFEHVSSSRLDEALAVGASWADAKQS 590

Query: 961  IENGFTKEVLKINAGPMLAEWNRVSAQWFLPRYFGQRKIKKAIRPYALQPV--EPETVQP 1018
             E  F +         +     +  A +F   + G R+    +      P+   P     
Sbjct: 591  AETRFVEAAWSAQVTSIRTALAKGQASFFSRLFGGYRRASAELAGLLSGPLPKSPSERLA 650

Query: 1019 LLHQVIRYQEELDFTDRYTAKLPSLFGRFGRDEEWDIIDQIIHEVSSLHSLLLSYSKDVA 1078
            L+ ++++ Q          A L ++ G   R E                S+  S SK +A
Sbjct: 651  LVDEIMKVQSLRHSLADEEAWLQAMLGPTWRGERTPF------------SVAASASKWLA 698

Query: 1079 KTSRIKQNLAL--QLTEGIRTFRDIHSHSLNELHQLADTLTATEQRLSTTLGITVETLYT 1136
               R   N+    QL   +    D  + +     ++     A  QR+     IT   L  
Sbjct: 699  GL-RATGNIGSSDQLVSSLDAVPDPEAAA----KEIKTKSIACRQRIDAP--ITRLQLDV 751

Query: 1137 NSADWIGIALQQAATWKENLDKLK---------DWYQWLQSYNKLNELGIGFIAEEYKEK 1187
              AD +G  L+ A+  +     L+         DW    ++     + G   + +   ++
Sbjct: 752  VRAD-LGTDLENASLSEMREAFLQMASDTACYGDWVGLARAIASAIDAGAEGVVDAVADE 810

Query: 1188 NIPTDLLTSSFCKSFYQAVIHYIIAKEPTLELFNGKIFNDIIAKYKQVSANFEDITKKEL 1247
             +P       F  +  +A  +      P L        +D++A +  +     D  +  +
Sbjct: 811  RVPPQRAAQEFAYACAEARWNAARGARPELNDLPQLDRHDLVALFSDLEKERIDTARNLI 870

Query: 1248 FARLASNIPSFTHEAIQSSEVGILQKNIRNNARGISIRKLFDQIPTLLSRMCPCMLMSPI 1307
             +R    +P  T       E+GI++  I        IR +      ++ R+ P MLMSPI
Sbjct: 871  LSRHFEQMPRGT-----MGEMGIIRGEIARKRGHKPIRWVMRNAGPMVQRIKPVMLMSPI 925

Query: 1308 SVAQYIDTDADKFDLIVFDEASQMPTYEAVGAIARGKNVVIVGDPKQMPPTSFFS--VNT 1365
            SVAQ++   + +FD++V DEASQ+   +A+G IAR + +V+VGD KQ+PPTSFF   V+ 
Sbjct: 926  SVAQFLPPGSAEFDILVIDEASQIKPEDALGVIARARQIVVVGDQKQLPPTSFFDRLVDD 985

Query: 1366 IDEDNIEME--------DLESILDDCLALSIPSKYLLWHYRSKHESLIAFSNSEYYDNKL 1417
            ++E++ E E        D+ESIL  C A  +  + L WHYRS+  SLI  SN+E+Y+++L
Sbjct: 986  VEENDDEEEAVVGATAADMESILSLCEARGLRQRMLEWHYRSRDPSLIQISNAEFYEDRL 1045

Query: 1418 MTFPSPDNIESK--VRMVAVDGYYDKGKS---RQ--NQAEAQAVVDEIARRLRSEELRKK 1470
            +  PSP  ++    ++   V G Y +G S   RQ  N+ EA+AVV  +A   R+    + 
Sbjct: 1046 VLPPSPLQLDPDYGLKFRRVPGIYARGGSGLGRQGTNRIEAEAVVAAMADHARN--WPEL 1103

Query: 1471 SVGVVTFSVVQQALIEDLLSDLFIFHPELETFALECE-EPLFIKNLENVQGDERDVILFS 1529
            S+GVV FS  Q  ++ ++L       P L+ F  E + E +F+KN+ENVQGDERDVIL S
Sbjct: 1104 SLGVVAFSKAQSNMLTEVLELARRRDPVLDAFLREGKSEDVFVKNIENVQGDERDVILIS 1163

Query: 1530 VGYGP-DAEGRV-SMNFGPLNRAGGERRLNVAVSRARYEMIIFSTLRSDMIDLNRTSSIG 1587
            VGYGP +  GR+ SM+FGP+N  GGERRLNV  SR+R    +F++     ID +R+S  G
Sbjct: 1164 VGYGPQEPNGRLPSMSFGPVNGEGGERRLNVLFSRSRVRCEVFASFDPGDIDPSRSSREG 1223

Query: 1588 VAGLKRFLEYAEKG 1601
               LKRFL++A+ G
Sbjct: 1224 PRLLKRFLDFAKTG 1237