Pairwise Alignments

Query, 216 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 392 a.a., ribonuclease D from Rhodopseudomonas palustris CGA009

 Score = 40.4 bits (93), Expect = 5e-08
 Identities = 39/183 (21%), Positives = 78/183 (42%), Gaps = 5/183 (2%)

Query: 26  VIQSEAETEKAVAYLQSQPILGIDSETRPSFTKGQSHKVALLQISSDECCFLFRLNMTGL 85
           +I +  +   A A L   P++ +D+E     T      + ++Q++S E   +      G+
Sbjct: 3   LISTSEQLADACARLARHPVITVDTEFLRETTFYPL--LCVVQMASAEEALVIDALADGI 60

Query: 86  T-QPLVDLLENPAVIKVGLSLKDDFMMLHKRAPFTQQSCIELQDYVRQFGIQDK-SLQKI 143
             +P  DL+ N  V+KV  + + D  ++  RA        + Q      G  D  +  ++
Sbjct: 61  DLKPFFDLMANEQVLKVFHAARQDIEIVWHRAGIVPHPIFDTQVAAMVLGYGDSIAYDQL 120

Query: 144 YAILFKEKISKSQRLSNWEADVLSDGQKQYAATDAWACLNIYNLLQ-ELKRTGNYEVESL 202
              +   +  K+ R ++W    L+  Q  YA +D     +++  L  +LK+ G  +  S 
Sbjct: 121 VERITGHRPDKTHRFTDWSRRPLTQEQVHYAVSDVTHLRDVFAALDADLKKRGRSDWVSE 180

Query: 203 PVE 205
            +E
Sbjct: 181 EME 183