Pairwise Alignments

Query, 683 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 568 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

 Score = 99.8 bits (247), Expect = 3e-25
 Identities = 177/707 (25%), Positives = 261/707 (36%), Gaps = 196/707 (27%)

Query: 10  GATVGSTLLLSSCN--FLDVDPYFEATFKEDSIFHSKKNAEGYLWNTPKGFP-DAGAIWG 66
           GA +  +  L+SC   FLD +P    T   D  F          W T +     A A + 
Sbjct: 23  GAALIPSFFLASCKKGFLDREPLDSVT---DISF----------WKTEEQLKLAANACYS 69

Query: 67  NSWNPGESASDEI--------TLKYQTNEFWGLQFSVGTINSRNLPIQNQWYDMYVIVAR 118
           N  N    A + +          +YQ        F+ GT+NS       +W ++Y  + R
Sbjct: 70  NLRNNNTIAMENMGDNTIYPPNSEYQAISAGNYDFTSGTLNS-------EWVNLYAAIRR 122

Query: 119 CNKMLKEVYNVPDMNEMDRRRYIGYVHFMRGYAYYHLLMNWG--PLII----VGDEELST 172
           CN  L+      +++     +Y G V F+R + Y +L+  +G  PL+     +GDEE+  
Sbjct: 123 CNHFLENYTKATNISATALAQYAGEVRFLRAFMYTYLIFLFGDVPLLSKTLDIGDEEVFG 182

Query: 173 SEPAEYYNRERATYDESVDYICDEFRLATQGIYSADEQSVNYYQRPTKGAAMALIARLRL 232
                    +RA   E ++++  +   A  G+ +A   +     R TKGAA A  AR+ L
Sbjct: 183 PR------NKRA---EVLEFVFADLDAAAAGLPTA--YTAADLGRITKGAAFAWKARVAL 231

Query: 233 FQASPLFNGGAAARKCFGTWKRKSDGAYYVNQEYDPRRWAVAAAAAKQLTKMG-YELHTV 291
           F                                    +W++A AAAK +  +  Y+L+T 
Sbjct: 232 FF----------------------------------EKWSIAEAAAKSVMDLNVYQLYTA 257

Query: 292 EADAQNPYPLASNVPTANFPDGAGNIDPYHSYSDMFTGEGIIQ--TNKEFIWAMESSNVT 349
              A+                          Y+D+FT +G +    NKE I A  +    
Sbjct: 258 GGTAK-------------------------CYNDLFTYKGKLAGGANKETILARPNVAGV 292

Query: 350 NYTHHSFPVKFGGWGSMSVPQR-VIDCYLMADGRTIHNSSAEYPYEPDFSRLTGESKKLG 408
           +  + S  ++     S   P + ++D YL  DG  I           D S L  ES    
Sbjct: 293 SVHNTSREIQVPDQTSRYSPTKSLVDAYLCIDGLPI-----------DKSPLYSES---- 337

Query: 409 TYLLRENVPMMYANRSARFYASIGFPGRYWP-MSSASTDAS---YVNQQFWYSHDDTNAG 464
           TY        ++ NR  R   +I  PG  W        DA+     N   W +  D    
Sbjct: 338 TYA------DIFKNRDPRMNQTILTPGGAWGGQDDGDADATTNPIFNTPKWNA--DKKGC 389

Query: 465 IAGAGNNVNDYSVSGYVPVKYIHPDDSWANGKGSVKGAFVTSPKPFPIIRYGEVLLEYVE 524
           I G G     +  S YV V  +              G           IRY EVLL + E
Sbjct: 390 ITGTG-----FYFSKYVEVAAV--------------GTVSQDSNDIHHIRYAEVLLTFAE 430

Query: 525 ALNRVE-GTVTVEVSDNTGTLIEETVSRDPAEMAKYFNMIRYRVGLPGVDANDMAEAD-N 582
           A  R+E GT+T    DNT                   N +R RVG+  +   ++A A  +
Sbjct: 431 A--RLEQGTLTQTDIDNT------------------INKLRDRVGMKRMVITELAAAGLD 470

Query: 583 FEKIIRNERQVELFNEGYRYFDTRRW--GTYLDEDANS------SNWRGLDVTKDRTNAN 634
               IR ER+VEL  EG RY+D  RW  G  L +D          ++    V    T+AN
Sbjct: 471 LRTEIRRERRVELALEGQRYYDILRWKQGDLLAQDVKGMKKSLVESFNQQYVATIATDAN 530

Query: 635 GNEGFWNIVTINTQNVRDRIALPKMVFLPIRHDELLKVPNADQNFGW 681
           G         +NT     +   PK    PI   +L + P   QN GW
Sbjct: 531 G------YFVVNTGR---KFVAPKNYLWPIPITQLQRNPVLGQNPGW 568