Pairwise Alignments

Query, 683 a.a., putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 607 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  148 bits (373), Expect = 8e-40
 Identities = 180/698 (25%), Positives = 274/698 (39%), Gaps = 141/698 (20%)

Query: 19  LSSC--NFLDVDPYFEATFKE-DSIFHSKKNAEGYLWNTPKGFPDAGAIWGNSW--NPGE 73
           L SC  N+LDV           D +F +      +  N   G  D   I       NP  
Sbjct: 16  LMSCKKNYLDVSNELAGGLTSTDQVFDNPAYTRRWYANVMSGVADYSNIINGDGLGNPWA 75

Query: 74  SASDEITLKYQTNEFWGL-QFSVGTINSRNLPIQNQWYDMYVIVARCNKMLKEVYNVPD- 131
             SDEI      N F  +  +++   NS N+   ++W  +Y ++ + N  L++   +P  
Sbjct: 76  GMSDEIA-----NGFGNVVNYNISPKNSLNMGF-HRWESLYQLIRQANIFLEKAKPIPAT 129

Query: 132 ------MNEMDRRRYIGYVHFMRGYAYYHLLMNWGPLIIVGDEELSTSEPAEYYNRERAT 185
                 +++ + ++    V FMR Y +Y L   +GP+ I      +  EP    +  R +
Sbjct: 130 GTDADMLDDAEFKQLKTNVLFMRAYYHYLLFEQYGPIPIA----TTVVEPTGDLDLPRQS 185

Query: 186 YDESVDYICDEFRLATQGIYSADEQSVNYYQRPTKGAAMALIARLRLFQASPLFNGGAAA 245
            DE V +I  E       +         +   PTKG A+A+ A+L ++ ASPL NGG A 
Sbjct: 186 VDEVVAFIDKELTAIMPLLPQTAITDELFLANPTKGVALAVKAKLWMYAASPLLNGGYAP 245

Query: 246 RKCFGTWKRKSDGAYYVNQEYDPRRWAVAAAAAKQLTKM----GYELHTVEADAQNPYPL 301
                      DG      + D  +W  A AA K++        YEL+    +       
Sbjct: 246 AVSLA----NKDGKKLFPAK-DQTKWNKALAATKEMISFAEQGNYELYKAFTN------- 293

Query: 302 ASNVPTANFPDGAGNIDPYHSYSDMFTGEGIIQTNKEFIWAMESSN---------VTNYT 352
                        G +DP  S  D+F        NKE IWA   +              T
Sbjct: 294 -------------GVLDPEKSIYDLFQ-----VYNKEIIWATSKNGWGGMDGDALDRRST 335

Query: 353 HHSFPVKFGGWGSMSVPQRVIDCYLMADGRTIHNSSAEYPYEPDFSRLTGESKKLGTYLL 412
             S P    G GS +V Q ++D + M DG  I+N+    P  P ++   G+S   G    
Sbjct: 336 PRSEP---NGLGSTAVLQELVDDFYMKDGLPINNAQF-LPASPLYTE-AGKSMYNGV--- 387

Query: 413 RENVPMMYANRSARFYASIGFPGRYWPMSSASTDASYVNQQFWYSHDDTNAGIAGAGNNV 472
             NV  M+ NR  RFY ++ F GR W +++   +       F+    +  +G        
Sbjct: 388 --NVSNMWINREPRFYNTVFFAGRKWHITNREIN-------FYKGSPNDRSG-------- 430

Query: 473 NDYSVSGYVPVKYIHPDDSWANGKGSVKGAFVTSP------KPFPIIRYGEVLLEYVEAL 526
              +VSGY+  K  +            +    TSP      +P  + R  E  L Y EAL
Sbjct: 431 -QSTVSGYLLYKRFN------------RKVHKTSPGVASVFRPSIVFRLAEFYLLYAEAL 477

Query: 527 NRVEGTVTVEVSDNTGTLIEETVSRDPAEMAKYFNMIRYRVGLPGVDANDMAEADN---F 583
           N VE                     +  ++ KY N++R R GLP ++  + A A N    
Sbjct: 478 NEVEA--------------------NNPDVLKYVNLVRERAGLPKLELLNAAIAGNQALQ 517

Query: 584 EKIIRNERQVELFNEGYRYFDTRRWGTYLDEDANSSNWRGLDVTKDRTNANGNEGFWNIV 643
            + I+ E ++EL  EG RYFD RRW   + E  +  N +G D      + +    F  I+
Sbjct: 518 REAIQRESRIELCTEGQRYFDVRRW--MIAEGNDGKNKQGGDFYGMNMDGDATTFFQRII 575

Query: 644 TINTQNVRDRIALPKMVFLPIRHDELLKVPNADQNFGW 681
                 V+ R+   K    PI ++EL K     QN GW
Sbjct: 576 ------VQRRVFETKQYLYPIPYNELEKSKLLVQNPGW 607