Pairwise Alignments

Query, 493 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 551 a.a., DNA-binding protein from Bifidobacterium breve UCC2003

 Score = 53.9 bits (128), Expect = 1e-11
 Identities = 108/504 (21%), Positives = 203/504 (40%), Gaps = 78/504 (15%)

Query: 9   LLADGERVTLECKKAQNGVPN--SLWETYSAFANTNGGILLLGVYENVAEKDSLMRFTIT 66
           +L   E +T+E K  Q    +   + +   A ANT GGIL LG+     E D     T+T
Sbjct: 3   MLPAKESLTVEFKSEQKRPQSHDEIVDNVVALANTEGGILYLGI-----EDDG----TVT 53

Query: 67  GVEDADK----IRKDLWNTINSREKVNVNLLHDEDVQTISV---NGKEVIAINVPRADYN 119
           GV D  +    +   ++N    +    V LL++ +V  +S+   N +++++ +  +    
Sbjct: 54  GVCDEHRNINGLAALIFNKTVPQLPARVALLYENEVPIVSIEVGNSQQIVSTSQGK---- 109

Query: 120 LRPVYINNNLMRGTYRRNHEGDYHCTEQMIKMMVRDAYEDGNDRMFLEYYT-------MD 172
                        T +R  + D   + +++ + V       + + F ++         +D
Sbjct: 110 -------------TLQRRLKADG--SPEVVPLFVSQFISRLSQQRFYDFSAQPAPEARLD 154

Query: 173 DIDIPTLEGYRVMFKTNNPEHIWNSLDHKEFLMQLGGYVVNRKDGTEGL--TIAGLLMFG 230
           D++  +    R   ++ N ++   S   ++F   L   V    DG  GL  ++AGLL  G
Sbjct: 155 DLNPDSRNKLRSHIRSANAQNSLLSFTDEDFDRALELVV----DGPYGLQPSVAGLLTIG 210

Query: 231 KGLPVRERFDYLRMDYIDKSNLIGDQRYSDRLTYDGTWENNLFNFIRMVVPRLTR--DIP 288
                        +D I +S       +  ++    + + N+  F+  +V    R  ++ 
Sbjct: 211 S------------VDAIHRSIPAASAVF--QVMKGMSPKVNMDPFVLPLVDMFDRVGELM 256

Query: 289 RPFQ-----MDGIIRKDDTPQHK-AVREAFTNMIIHADLMLNGLLRVEKYDDRFVLSNP- 341
            P+      M G+IR D     + A REA  N   H D    G +R    DD   ++NP 
Sbjct: 257 EPWNPSHEVMSGLIRVDLPDFDRGAFREAMINAFCHRDYARMGSVRFLVDDDGLTIANPG 316

Query: 342 GLLKLPVEQIYAGGESKARNQRMQHMLRMIGYGENLGSGFPLILSAWNEKHWLKPELVEQ 401
           G ++   E      +  +RN ++  +L+  GY E  G G   I +         P+   Q
Sbjct: 317 GFIEGVSEDNLLTAQPCSRNPQLALILKAAGYVERTGRGVDTIYAGSIAAGGSFPD-YSQ 375

Query: 402 PELMQVKLILH--IENRVYVTK--DVTKDVTKELTERQQIILEFMQADGTITISEMSQKT 457
               +V L L   + +  +VT   D  +     L     I+L  ++    +T+ ++   +
Sbjct: 376 SSAEEVILFLRRVVPDEAFVTMIGDEERRRGAPLPVWSLIVLSLLREHRRLTMVQLCDFS 435

Query: 458 NVTERTIKRDIESLTEKGILSREG 481
           ++  R I   +E+L E G++   G
Sbjct: 436 HLEHRRIVSAVENLVEAGLVEGVG 459



 Score = 31.2 bits (69), Expect = 1e-04
 Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 430 ELTERQQIILEFMQA-DGTITISEMSQKTNVTERTIKRDIESLTEKGILSREGGRKEGRW 488
           + T R  ++LEF +  DG +T +++     ++  +  R ++ L + G L REG     R+
Sbjct: 489 DATRRSGLVLEFAEKNDGVVTTADVMDLFGLSYISAYRLLKKLEDVGKLRREGNGPSSRY 548

Query: 489 VI 490
           V+
Sbjct: 549 VL 550