Pairwise Alignments

Query, 461 a.a., UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 311 a.a., UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC from Phaeobacter inhibens DSM 17395

 Score =  142 bits (357), Expect = 2e-38
 Identities = 98/296 (33%), Positives = 145/296 (48%), Gaps = 30/296 (10%)

Query: 4   QKTLKDSFSLSGKGLHTGLDLTVTFNPAPDNHGYKIQRIDLE-GQPTIDAVADNVTETTR 62
           Q TLK S +  G GLH+G  + +   PA   HG   +R D+  G   + A+ D V  T  
Sbjct: 2   QNTLKASVTFDGVGLHSGKPVRMILKPAAAGHGICFRRTDIALGNTLVPALWDRVERTPL 61

Query: 63  GT-VLSKNGVKVSTVEHGMAALYALGIDNCLIQVNGPEFPILDGSAQYYVQEIERVGTEE 121
            T +++ +GV VSTVEH MAAL   GI N +I ++GPE PI+DGS+ Y+V+ I + G + 
Sbjct: 62  CTRLVNASGVAVSTVEHIMAALAGCGIHNAMIDIDGPEVPIMDGSSAYFVRGIMQTGIQR 121

Query: 122 QSAVKDFYIIKSKIEFRDESTGSSIIVLPDENFSLNVLVSYDSTIIPNQFATLEDMHN-- 179
            +A    Y I   +    E  G++  +LP    ++   + +    I  Q  TL D+ N  
Sbjct: 122 LAAPVTAYQILKPVSVSHE--GATATLLPSNRLTIEFHIDFAEAAIGRQSKTL-DLRNGA 178

Query: 180 FKDEVAASRTFVFVREIEPLLSAGLIKGGDLDNAIVIYERKMSQESYDKLADVMGVPHMD 239
           F  E+  SRTF    ++E + + GL  GG      V+++    Q         +G+ H D
Sbjct: 179 FARELCDSRTFCRRVDVESMQANGLALGGVPGENAVVFDGPEVQSG-------LGLRHAD 231

Query: 240 ADQLGYINHKPLVWPNECARHKLLDVIGDLALIGKPIKGRIIATRPGHTINNKFAR 295
                           E  RHK+LD +GDL+L G P+ G  I  R GH++ N   R
Sbjct: 232 ----------------EPVRHKMLDALGDLSLAGGPVFGHYIGDRAGHSLTNTLLR 271