Pairwise Alignments

Query, 559 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 543 a.a., polysaccharide lyase from Pedobacter sp. GW460-11-11-14-LB5

 Score =  207 bits (526), Expect = 1e-57
 Identities = 169/509 (33%), Positives = 243/509 (47%), Gaps = 87/509 (17%)

Query: 74  AFPTAEGFGKNATGGRGGKVVIVTNTNDDGEGSFRWALQQCSQNEATTVVFAVSGKIELK 133
           AFP AEG G  + GGRGGKV +VT+  D G+G+ R A   C Q  A  +VF VSG I LK
Sbjct: 84  AFPGAEGGGAYSFGGRGGKVYVVTSLEDSGKGTLREA---CEQGGARIIVFNVSGIIRLK 140

Query: 134 SEIRCKAKNFTLAGQTAPGDGVCIIKNEINFGGSENFIIRHMRFRVGEKDASGKEHNAAC 193
           + +  +A   T+AGQ+APGDGVC+    + +  + + +IR+MRFR G+ D + ++     
Sbjct: 141 TPLIIRAPYITIAGQSAPGDGVCVAGESV-WINTHDVVIRYMRFRRGQTDVTRRDD---A 196

Query: 194 LRVENANNFIIDHCSFSWASEENTDF---------------IDTHFSTVQWCISSEGLYY 238
           +      N IIDH S SW  +EN                  + T   T+Q  I SE L  
Sbjct: 197 IGGNPVGNIIIDHVSASWGLDENMSIYRHVYDKEDGSKPEKLPTVNVTIQNSIFSEAL-- 254

Query: 239 SVNKKGARAYGGAWGGTSSTYHHNLFAHCNSRTPLMNGARGKDPGQDIVVYMEYINNVNY 298
                   A+G   GG +ST+  NL+A   SR P + G  G            + NNV +
Sbjct: 255 ---DTYNHAFGSTIGGLNSTFMRNLWASNISRNPSV-GMYGD---------FGFANNVIF 301

Query: 299 NWGSQMATYGGMDESQDPEHHGWSCNFVNNYYKPGPATTARVK-ELKFFRQSSAREPNKA 357
           NW ++ A  GG + S          +F+NNYYKPGP T A      +  +  S R+  K 
Sbjct: 302 NWWNRSAD-GGDNASL--------YSFINNYYKPGPITPAGEPISYRILKPESGRD--KK 350

Query: 358 PLRAVSKWYFHGNVMEGNSQLTSDNWEGVYTDGNYPYS-------IDEMKASSFIIPSGK 410
                 + Y  GN++EGN ++T +NW+G    G  P S       +D MK     +P  K
Sbjct: 351 FSNEFGRAYVTGNIIEGNEKVTKNNWDG----GVQPESKRDKQKLLDSMKVDK-PLPMAK 405

Query: 411 ENYEQYWFDWESYTLSDQYESAEKAYQSVLADKSGAGAFPRDKVDVRIVKEVKSGLCTYT 470
                        ++ D     +KAY  VLA+ +GA    RD VD RI+K+V +G   + 
Sbjct: 406 ------------ISIID----TKKAYDYVLAN-AGASLPVRDAVDQRIIKQVTTGKIEHV 448

Query: 471 GAGD--ANSGAIPGIINSPDEAEGLDGLTYKTSG-------TITDTDQDGMDDAWEKKVG 521
             G   A    +   + +    +G+     +  G          D+D DG+ DAWE K G
Sbjct: 449 EDGKLPAKQSYVKRRLPADSYKQGIISDIAQVGGYPEYKGKPYLDSDHDGIPDAWEIKNG 508

Query: 522 LDPANPEDRNRTTEVGYTALEVYLNSLVD 550
           L+P + +D  + ++ G   +EVYLNSLVD
Sbjct: 509 LNPKDAKDATKLSKSGDANIEVYLNSLVD 537