Pairwise Alignments

Query, 559 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 551 a.a., polysaccharide lyase from Pedobacter sp. GW460-11-11-14-LB5

 Score =  205 bits (521), Expect = 4e-57
 Identities = 169/515 (32%), Positives = 244/515 (47%), Gaps = 83/515 (16%)

Query: 72  LKAFPTAEGFGKNATGGRGGKVVIVTNTNDDGEGSFRWALQQCSQNEATTVVFAVSGKIE 131
           L AFP AEG G  + GG GG+V++V N ND G GS R A   C Q  A  VVF V+G I 
Sbjct: 83  LLAFPGAEGGGAYSFGGHGGRVIVVKNLNDRGPGSLRDA---CEQGGARIVVFNVAGIIR 139

Query: 132 LKSEIRCKAKNFTLAGQTAPGDGVCIIKNEINFGGSENFIIRHMRFRVGEKDASGKEHNA 191
           LK+ +  +A   T+AGQTAPGDGVC+    + +  + + I+R MRFR GE     ++   
Sbjct: 140 LKTPLIIRAPYITIAGQTAPGDGVCVAGESV-WLNTHDVIVRFMRFRRGETFVGRRDD-- 196

Query: 192 ACLRVENANNFIIDHCSFSWASEENTDF---------------IDTHFSTVQWCISSEGL 236
             +      N +IDH S SW  +EN                  + T   T+Q  I SE L
Sbjct: 197 -AIGGNPVGNIMIDHVSASWGLDENMSMYRHMYNDSTGKTEEKLGTVNITIQNSIFSEAL 255

Query: 237 YYSVNKKGARAYGGAWGGTSSTYHHNLFAHCNSRTPLMNGARGKDPGQDIVVYMEYINNV 296
            Y        A+G   GG +  +  NL+A         NGAR    G + +    + NNV
Sbjct: 256 DY-----WNHAFGSTLGGENCAFVRNLWAD--------NGARNPSIGWNGI--FNFANNV 300

Query: 297 NYNWGSQMATYGGMDESQDPEHHGWSCNFVNNYYKPGPATTARVK-ELKFFRQSSAREPN 355
            +NW ++ +T GG   +Q         N +NNYYKPGP T  +     +  +  S R  +
Sbjct: 301 VFNWNNR-STDGGDYTAQ--------YNIINNYYKPGPVTELKDPISYRILKPESGR--S 349

Query: 356 KAPLRAVSKWYFHGNVMEGNSQLTSDNWEGVYTDGNYPYSIDEMKASSFIIPSGKENYEQ 415
           K P     + Y  GN+++GN ++T +NW+G     +   ++  ++ +    P+ K     
Sbjct: 350 KLPYVVFGRAYVAGNIIDGNERVTKNNWDGGVQMEDKKGNLMSLETAGKYFPAMKAKDP- 408

Query: 416 YWFDWESYTLSDQYESAEKAYQSVLADKSGAGAFPRDKVDVRIVKEVKSG-LCTYTGA-- 472
             F     ++    ++ E     VLA+ +GA    RD VD R+VK+V +G +  Y  A  
Sbjct: 409 --FPMPKISIIPTLQAKEY----VLAN-AGATLPKRDPVDTRVVKQVATGKIEVYPNAKP 461

Query: 473 -----------GDANSGAIPGIINSPDEAEGLD---GLTYKTSGTITDTDQDGMDDAWEK 518
                      GD+      GII    +  G     G  YK      D+D DGM DA+E 
Sbjct: 462 SAFQFEHRRLPGDSYK---QGIITEVSQVGGYPEYKGTPYK------DSDDDGMPDAYEL 512

Query: 519 KVGLDPANPEDRNRTTEVGYTALEVYLNSLVDESI 553
           K GL+P +  D  + T+ GY+ +EVYLNS+V  SI
Sbjct: 513 KNGLNPKDASDAAKITKSGYSNIEVYLNSVVPVSI 547