Pairwise Alignments

Query, 523 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 551 a.a., polysaccharide lyase from Pedobacter sp. GW460-11-11-14-LB5

 Score =  217 bits (553), Expect = 8e-61
 Identities = 170/499 (34%), Positives = 242/499 (48%), Gaps = 76/499 (15%)

Query: 58  RSTVAAFPGAEGAGKLTTGGAGGTVYTVTSLKDDGSEGTLRWAIEKSGKRTIVFAVGGVI 117
           +S + AFPGAEG G  + GG GG V  V +L D G  G+LR A E+ G R +VF V G+I
Sbjct: 80  QSKLLAFPGAEGGGAYSFGGHGGRVIVVKNLNDRGP-GSLRDACEQGGARIVVFNVAGII 138

Query: 118 PLTKQLQIKNDDITIAGQTAPHPGICLKNYTLRVNANNVIIRFIRSRMGDE-CKTEDDSM 176
            L   L I+   ITIAGQTAP  G+C+   ++ +N ++VI+RF+R R G+      DD++
Sbjct: 139 RLKTPLIIRAPYITIAGQTAPGDGVCVAGESVWLNTHDVIVRFMRFRRGETFVGRRDDAI 198

Query: 177 NGYQDSYPGKRNIIIDHCSMSWSTDECASFY---------------GNTDFTMQWCIISE 221
            G         NI+IDH S SW  DE  S Y               G  + T+Q  I SE
Sbjct: 199 GGNPVG-----NIMIDHVSASWGLDENMSMYRHMYNDSTGKTEEKLGTVNITIQNSIFSE 253

Query: 222 SLTNSLHNKGGHGYGGIWGGSPATFHHNLLAHHSNRTPRLCGSRYSNREDMEKADLCNNV 281
           +L     +   H +G   GG    F  NL A +  R P +  +   N          NNV
Sbjct: 254 AL-----DYWNHAFGSTLGGENCAFVRNLWADNGARNPSIGWNGIFN--------FANNV 300

Query: 282 IYNWTGEGAYAGE-GGSYNIMNNYYKPGPV-NASAKVHCRIFTAYVDDGKNQQAQGIYGK 339
           ++NW       G+    YNI+NNYYKPGPV      +  RI     + G+++    ++G+
Sbjct: 301 VFNWNNRSTDGGDYTAQYNIINNYYKPGPVTELKDPISYRILKP--ESGRSKLPYVVFGR 358

Query: 340 FYVNGNYFETHEKLSNS-------QKTELANANADNTSSTAFCVKNNEVSTKDLLVSLRF 392
            YV GN  + +E+++ +        + +  N  +  T+   F      +  KD      F
Sbjct: 359 AYVAGNIIDGNERVTKNNWDGGVQMEDKKGNLMSLETAGKYF----PAMKAKD-----PF 409

Query: 393 PILDDYSFVQSAQDAYQSVLLYAGAS-NLRDKIDKRIVKETQEG-------------TFT 438
           P +   S + + Q A + VL  AGA+   RD +D R+VK+   G              F 
Sbjct: 410 P-MPKISIIPTLQ-AKEYVLANAGATLPKRDPVDTRVVKQVATGKIEVYPNAKPSAFQFE 467

Query: 439 YTGSNGGT--NGLIDTQADVEGWSEYASTTTTQQDSDKDGIPDEWETANGLNPNDGSDGN 496
           +    G +   G+I   + V G+ EY    T  +DSD DG+PD +E  NGLNP D SD  
Sbjct: 468 HRRLPGDSYKQGIITEVSQVGGYPEYKG--TPYKDSDDDGMPDAYELKNGLNPKDASDAA 525

Query: 497 KYNLSKEYTNLEVYLNSLV 515
           K   S  Y+N+EVYLNS+V
Sbjct: 526 KITKS-GYSNIEVYLNSVV 543