Pairwise Alignments

Query, 598 a.a., putative chloride channel protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 487 a.a., H(+)/Cl(-) exchange transporter ClcA from Rahnella sp. WP5

 Score =  104 bits (260), Expect = 7e-27
 Identities = 82/333 (24%), Positives = 152/333 (45%), Gaps = 27/333 (8%)

Query: 125 TIGFGGSVGAEAPIVLTGSAIGSNLGSVFKMEHRTLM-LLVGCGAAGAIAGIFKAPIAGL 183
           T+G G  +G E P V  G+ +G  +  +F++        L+  GAA  ++  F AP+AG+
Sbjct: 140 TLGAGMVLGREGPTVQMGANVGKMMVDIFRLRSAEARHSLLATGAAAGLSAAFNAPLAGI 199

Query: 184 VFTLEVLMIDLTMS--SLLPLLISAVTAATVSYITTGTEAMFKFNLDQAFELERIPYVIL 241
           +F LE + +    S  S+  + I  + ++ V  I  G  A+ +     +  L  +   ++
Sbjct: 200 LFILEEMRLQFRYSLISIKAVFIGVIMSSIVFRIFNGDGAVIEVGRLASAPLNTLWLYLV 259

Query: 242 LGIFCGLISLYFTRAMNSIEGVFGKLK--NPYQKLAFGGVM---LSVLIFLFPPLYGEGY 296
           LG+  G++ + F   +   + +F ++   N  + L  GG++     +L  +   + G G+
Sbjct: 260 LGMVFGVVGVSFNALIFRTQDMFARVHGGNLRKILIIGGMLGGFCGLLGLVHQEVTGGGF 319

Query: 297 DTIELLLNGTSAAEWDTVMNNSMFYGYGNLLQVYLMLIILLKVFASSATNGGGGCGGIFA 356
             I L     +A ++  +M               L++I +++V  +      G  GGIFA
Sbjct: 320 ALIPL----AAAGKYSLMM---------------LLVIFVVRVVTTLLCFASGAPGGIFA 360

Query: 357 PSLYLGCIAGFVFSHFSNDFAFSAYLPEKNFALMGMAGVMSGVMHAPLTGVFLIAELTGG 416
           P L LG + G  F   +  +     +    FA+ GM  + +  + APLTG+ L+ E+T  
Sbjct: 361 PMLALGTLLGTAFGTAALAWFPQYGIQPATFAIAGMGALFAASVRAPLTGIVLVLEMTDN 420

Query: 417 YDLFLPLMIVSVSSYLTIIAFEPHSIYSMRLAK 449
           Y L LP++I  + + L         +YS  L +
Sbjct: 421 YQLILPMIITCLGATLLAQFLGGKPLYSAILTR 453