Pairwise Alignments

Query, 598 a.a., putative chloride channel protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 578 a.a., voltage-gated chloride channel protein ClcB from Herbaspirillum seropedicae SmR1

 Score =  176 bits (446), Expect = 2e-48
 Identities = 146/602 (24%), Positives = 268/602 (44%), Gaps = 59/602 (9%)

Query: 6   RQSLLQRCIKWREANIKEKQFILILSFLVGIFTAIAALFLKFLIHQIQNFLTNNFNATSA 65
           R  LL  C       + E   +L+   L G   A+A +  +  I  +Q ++T +  +   
Sbjct: 9   RLRLLNAC------RVSESHSMLLWGALAGFVGALATIAFRECIALLQIWMTGHDGSFVD 62

Query: 66  N------YLYLVYPVIGIFLAGWFVRNIVKDDISHGVTKILYAISRRQGRIKRHNIWSST 119
                  Y  ++ P  G  +AG F+    +    +G    + A++   G I   N    +
Sbjct: 63  IAKGLPWYTRVLLPTCGGVVAGLFLVWAKRTPAGNG-GDYMEAVAIGDGAIPVRNTLLRS 121

Query: 120 IASAITIGFGGSVGAEAPIVLTGSAIGSNLGSVFKMEHRTLMLLVGCGAAGAIAGIFKAP 179
           I+S  +I  GGS+G E P+V   +   S +G         L LLV CGAA  I   + AP
Sbjct: 122 ISSLASIASGGSIGREGPMVQLSALCASLVGKFSHFPSSRLRLLVACGAAAGITSAYNAP 181

Query: 180 IAGLVFTLEVLMIDLTMSSLLPLLISAVTAATVSYITTGTEAMFKFNLDQAFELERIPYV 239
           IAG  F  E+++  L M S  P+++++V A        G  A ++           +   
Sbjct: 182 IAGAFFITEIVLGSLVMESFGPVVVASVVANITMRELPGYRAAYEMPYFPEIGGWEVMLF 241

Query: 240 ILLGIFCGLISLYFTRAMNSIEGVFGKLKNPYQ-KLAFGGVMLSVLIFLFPPLYGEGYDT 298
           ++LG+  G+++  F R +   +  FGKL+ P   +L  GG+++ ++    P ++G GY  
Sbjct: 242 LVLGVLAGVLAPQFLRVLELGKHGFGKLRLPLPVRLGVGGLLVGLISVQVPEVWGNGYSL 301

Query: 299 IELLLNGTSAAEWDTVMNNSMFYGYGNLLQVYLMLIILLKVFASSATNGGGGCGGIFAPS 358
           +  LL+  ++  W  V                 ++++++KV A+S T G G  GGIF P+
Sbjct: 302 VNSLLH--TSWVWQAV-----------------LMVLVVKVLATSITVGSGAVGGIFTPT 342

Query: 359 LYLGCIAGFVFS---------HFSNDFAFSAYLPEKNFALMGMAGVMSGVMHAPLTGVFL 409
           L++G   G++F          H S  FA         +A++GM   ++   +APL  + +
Sbjct: 343 LFVGAAVGYLFGDAAQALLPVHISQPFA---------YAMVGMGAFLAAASYAPLMAILM 393

Query: 410 IAELTGGYDLFLPLMIVSVSSYLTIIAFEPHSIYSMRLAKRGQLLTHHKDKAVLTLMKME 469
           I E+T  Y + LPLM+  V +Y+   + +  S+Y + L +       ++++  L    M 
Sbjct: 394 IFEMTLSYQVVLPLMLSCVVAYVVARSVDGRSMYEITLKRH----RDNEERLRLRGTHMS 449

Query: 470 NVVEKDFVAVHPEMDLGELVKAIAASHRNMFPVTDKKTGELLGIVLLDDIRN-IMFRQEL 528
            ++      +H E  L E + A+   +   +          LG+V L DI + ++ ++E 
Sbjct: 450 ELIRPAETVLHEEASLEE-ISALFLKYPVKYVYIVDGRQRYLGVVALQDITSWLLDKKEA 508

Query: 529 YHRFTVNKLMTSAPAKIFDTDGMEQVMQTFDDTKAWNLPVV--DEEGRYQGFVSKSKIFN 586
             R   + L      ++     + + +Q F D +   LPV+   ++ +  G V K+ + +
Sbjct: 509 AGRVARDFLRPHFLHEVTPDMSLGEALQLFLDHQGERLPVIASADDPQLLGVVFKTSLLD 568

Query: 587 SY 588
           +Y
Sbjct: 569 AY 570