Pairwise Alignments

Query, 320 a.a., TPR-domain containing protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 363 a.a., TPR repeat from Synechococcus elongatus PCC 7942

 Score = 56.2 bits (134), Expect = 1e-12
 Identities = 59/271 (21%), Positives = 105/271 (38%), Gaps = 5/271 (1%)

Query: 39  QRMGRPDYAIKCFTEALAIE-EDFETMGYLSQLYIPMGETEKARELLEKMAVMEPHVTST 97
           + +GR   A++ + +ALAI+ +  E       +   +G  E A    ++   +  H    
Sbjct: 75  EHLGRLPEAVESYEQALAIDRQQPEVWNNRGIVLRKLGRLEDAIASYQQAIALAAHYAQA 134

Query: 98  FLTLANVCYIQEDYKAMEEAAGKAIAIEEGNAVAHFLLGKARKGQDDEIMTIAHLTKAIT 157
           +       + Q  Y+       +++AI+   + A   LG+     D     +  L +AI 
Sbjct: 135 WANCGFALWQQGRYREAVRHYEQSVAIDPDQSSAWRQLGQIYLSVDQPDQALRCLDQAIA 194

Query: 158 LKDDFIEARLMRAEALLKMKQYKETMEDIDAVLAQNPEEETAILLRGKVKEANGQEEEAE 217
           L+     A   R  AL  + QY   +   +             + RG       + EEA 
Sbjct: 195 LQPQQATAWTWRGHALYNLGQYAAALTSYENAELLGDRPLLLSIQRGHTLAQLERYEEAL 254

Query: 218 TDYKFVTEI---NPFNEQAYLYLGQLYINQKKLAEAIALFDEAIELNPNFAEAYKERGRA 274
             Y  +          E AY Y G ++   +    A+A FD+AI  NP+ AEA+  R   
Sbjct: 255 ASYAAILPQLTGEAAAEVAY-YQGLVWAYLQDWTAALAAFDQAIAGNPDLAEAWYNRAAL 313

Query: 275 KLLNGDKDGSVEDMKKSLELNPKDEASLNGE 305
                    ++ D+++++ L+P    SL  E
Sbjct: 314 HARLDQPVAAIADLQQAIALDPDTYRSLAAE 344



 Score = 40.8 bits (94), Expect = 5e-08
 Identities = 29/134 (21%), Positives = 63/134 (47%)

Query: 164 EARLMRAEALLKMKQYKETMEDIDAVLAQNPEEETAILLRGKVKEANGQEEEAETDYKFV 223
           EA   RA  L  + +  E +E  +  LA + ++      RG V    G+ E+A   Y+  
Sbjct: 65  EALNNRAIVLEHLGRLPEAVESYEQALAIDRQQPEVWNNRGIVLRKLGRLEDAIASYQQA 124

Query: 224 TEINPFNEQAYLYLGQLYINQKKLAEAIALFDEAIELNPNFAEAYKERGRAKLLNGDKDG 283
             +     QA+   G     Q +  EA+  +++++ ++P+ + A+++ G+  L     D 
Sbjct: 125 IALAAHYAQAWANCGFALWQQGRYREAVRHYEQSVAIDPDQSSAWRQLGQIYLSVDQPDQ 184

Query: 284 SVEDMKKSLELNPK 297
           ++  + +++ L P+
Sbjct: 185 ALRCLDQAIALQPQ 198



 Score = 23.9 bits (50), Expect = 0.006
 Identities = 19/76 (25%), Positives = 32/76 (42%)

Query: 220 YKFVTEINPFNEQAYLYLGQLYINQKKLAEAIALFDEAIELNPNFAEAYKERGRAKLLNG 279
           Y F     P N   +   G L     +  EA+A ++ A+E+ P   EA   R       G
Sbjct: 19  YDFRLRHEPRNCTLWNNRGILLERLNRWTEALASYNCALEITPQRQEALNNRAIVLEHLG 78

Query: 280 DKDGSVEDMKKSLELN 295
               +VE  +++L ++
Sbjct: 79  RLPEAVESYEQALAID 94