Pairwise Alignments

Query, 417 a.a., putative exodeoxyribonuclease VII large subunit (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 447 a.a., exodeoxyribonuclease VII large subunit (RefSeq) from Shewanella amazonensis SB2B

 Score =  142 bits (359), Expect = 2e-38
 Identities = 133/456 (29%), Positives = 209/456 (45%), Gaps = 70/456 (15%)

Query: 2   DSLSLLELNALVRRSLEQCLPDEYWIQAELSDVRSNTTGHCYLEFVQKDPRSNNLVAKAR 61
           D  ++  LN  VR+ LE  L    W+  E+S+  S ++GH YL    KD  S    A  +
Sbjct: 7   DVYTVSRLNGEVRQLLEGQL-GRIWLTGEISNFSSPSSGHWYLTL--KDSHSQLRCAMFK 63

Query: 62  GMIWSNIYRLLKPYFEETTGQLFASGIKVLVKVTVQFHELYG-YSLTVLDIDPAYTLGDM 120
           G    N     KP           +G +VLV+ ++  +E  G Y L +  + PA   G +
Sbjct: 64  GR---NTTVAFKPI----------NGQQVLVRGSISVYEPRGDYQLLIEAMFPAGD-GLL 109

Query: 121 ARRRREILMQLEEEGVLTLNKELEMPVLPQRIAVISSATAAGYGDFCHQLQHNSGGFFFY 180
           A +   + M+L  EG+   + +  +P   QRI VI+S T A   D  H L+         
Sbjct: 110 AAQFEALKMKLAAEGLFAQDTKRPLPESIQRIGVITSPTGAAIRDVLHVLKRRDPSV--E 167

Query: 181 TELFPALMQGNQVEESVLAALDRINDRVNEFDVVVIIRGGGATSDLSGFDTYLLAAACAQ 240
             ++P  +QG   ++ ++ A++  N R+ E DV+++ RGGG+  DL  F++  LA A   
Sbjct: 168 VVIYPTAVQGTGADKDIIRAIELANQRL-EVDVLLLTRGGGSLEDLWCFNSEALAHAIYN 226

Query: 241 FPLPVITGIGHERDDTVLDSVAHTRVKTPTAAAELLIHRITESADHLEELSARLQQG--A 298
             L +++ +GHE D ++ D VA  R  TP+A AELL    +     L    ARL QG   
Sbjct: 227 STLTIVSAVGHEVDTSIADFVADVRAPTPSAGAELLSGDQSHKQQKLAGALARLTQGWRH 286

Query: 299 YAL---------------------LEQEGRRLEMIQTRIPNLVHRKLTDARFAL--LAAG 335
           YAL                     L+Q+ +RL+ ++ R+ + + R+L+        L A 
Sbjct: 287 YALKRHSGLISLQSRLDRQDPKRQLQQQSQRLDELELRLTSSIQRRLSSHTLTTERLKAR 346

Query: 336 KDLAQATQTLLSRHRHRLELLRQRVADASPDKL----------------------LSRGY 373
            +     Q L+   + RL  L +R+  A  D+L                      LSRGY
Sbjct: 347 LERHSPAQRLM-MEQQRLTYLDERLKGAMEDRLEDAQTHLGGLSHSLASVSPLATLSRGY 405

Query: 374 SITL-KDGKAVTDAASLNPGDQLVTRLAKGSFTSEV 408
           SIT    G+ +T A+S+  GD + T+L +GS  + V
Sbjct: 406 SITRDAGGRVLTQASSMKTGDTIETQLEQGSLLARV 441