Pairwise Alignments

Query, 417 a.a., putative exodeoxyribonuclease VII large subunit (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 465 a.a., exodeoxyribonuclease VII large subunit from Herbaspirillum seropedicae SmR1

 Score =  129 bits (324), Expect = 2e-34
 Identities = 104/364 (28%), Positives = 169/364 (46%), Gaps = 22/364 (6%)

Query: 4   LSLLELNALVRRSLEQCLPDEYWIQAELSDVRSNTTGHCYLEFVQKDPRSNNLVAKARGM 63
           L++  LN  V R LE+  P   W++ E+S+     +GH Y     +  +   ++ K R  
Sbjct: 29  LTVSALNQAVGRMLERNFP-LLWVKGEVSNFTRAASGHWYFNLKDEGAQVRAVMFKGRA- 86

Query: 64  IWSNIYRLLKPYFEETTGQLFASGIKVLVKVTVQFHELYG-YSLTVLDIDPAYTLGDMAR 122
                         +  G +   G KV V+  V  +   G Y L V  I  +  +GD+  
Sbjct: 87  --------------QYAGFMPREGDKVEVRTLVTLYAPRGDYQLNVEAIRRS-GVGDLYA 131

Query: 123 RRREILMQLEEEGVLTLNKELEMPVLPQRIAVISSATAAGYGDFCHQLQHNSGGFFFYTE 182
              ++  +LE EG+    ++  +P  P+RI +++S  AA   D    L+  +        
Sbjct: 132 AFLQLKERLEREGLFARERKRALPGFPRRIGIVTSPQAAALRDVLTTLRRRAP--HVEVV 189

Query: 183 LFPALMQGNQVEESVLAALDRINDRVNEFDVVVIIRGGGATSDLSGFDTYLLAAACAQFP 242
           L+P  +QG    + + AA+ R ++R  E DV+++ RGGG+  DL  F+  ++A A     
Sbjct: 190 LYPTPVQGEGAGQRIAAAIGRASERA-ECDVLLVCRGGGSIEDLWSFNEEVVARAIVAAT 248

Query: 243 LPVITGIGHERDDTVLDSVAHTRVKTPTAAAELLIHRITESADHLEELSARLQQGAYALL 302
           +PVI+G+GHE D T+ D  A  R  TPTAAAEL      +    L   +A L +     L
Sbjct: 249 MPVISGVGHETDFTIADFAADLRAPTPTAAAELAASSRQDWLAELRGHAADLTRALRRTL 308

Query: 303 EQEGRRLEMIQTRIPNLVHRKLTDARFALLAAGKDLAQATQTLLSRHRHRLELLRQRVAD 362
             + + ++ +  R+ +     +   R  LLA    L+ A Q  L+R RH L+ L  R+A 
Sbjct: 309 ADKAQSVDWLSRRLVS-PSAYIQHERVKLLALQNRLSHANQIPLTRMRHGLQQLASRLAH 367

Query: 363 ASPD 366
             PD
Sbjct: 368 QLPD 371