Pairwise Alignments

Query, 417 a.a., putative exodeoxyribonuclease VII large subunit (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 448 a.a., exodeoxyribonuclease VII large subunit (RefSeq) from Shewanella sp. ANA-3

 Score =  139 bits (349), Expect = 2e-37
 Identities = 130/448 (29%), Positives = 200/448 (44%), Gaps = 68/448 (15%)

Query: 9   LNALVRRSLEQCLPDEYWIQAELSDVRSNTTGHCYLEFVQKDPRSNNLVAKARGMIWSNI 68
           LN  VR+ LE  L  + W+  E+S+  + ++GH YL    KD  S    A  +G      
Sbjct: 14  LNGEVRQILEGQL-GKVWLNGEISNFSAPSSGHWYLTL--KDHYSQIRCAMFKG------ 64

Query: 69  YRLLKPYFEETTGQLFASGIKVLVKVTVQFHELYG-YSLTVLDIDPAYTLGDMARRRREI 127
            R     F+   GQ      +VLVK  +  +E  G Y L +  + PA   G +A++   +
Sbjct: 65  -RNQSVSFKPVNGQ------QVLVKGAISVYEPRGDYQLLIESMLPAGD-GLLAQQFEAL 116

Query: 128 LMQLEEEGVLTLNKELEMPVLPQRIAVISSATAAGYGDFCHQLQHNSGGFFFYTELFPAL 187
            M+L  +G+   + + ++P   QRI VI+S T A   D  H L            ++P  
Sbjct: 117 KMKLAAQGLFAADTKRQLPKNIQRIGVITSPTGAAIRDVLHVLARRDPSIEVI--IYPTQ 174

Query: 188 MQGNQVEESVLAALDRINDRVNEFDVVVIIRGGGATSDLSGFDTYLLAAACAQFPLPVIT 247
           +QG   + ++  A++  N R+ E DV+++ RGGG+  DL  F++  LA       LPV++
Sbjct: 175 VQGENADMNICQAINIANQRL-EVDVLLLTRGGGSLEDLWCFNSEALAHTIYNSALPVVS 233

Query: 248 GIGHERDDTVLDSVAHTRVKTPTAAAELLIHRITESADHLEELSARLQQGAYALLEQEGR 307
            +GHE D T+ D VA  R  TP+A AELL       +  L  + +RL+Q A     ++ +
Sbjct: 234 AVGHEVDTTISDYVADVRAPTPSAGAELLSQDSDNKSQRLATVLSRLKQSASHYQLKQEK 293

Query: 308 RLEMIQTRIPNL-------------------VHRKLTDARFALLAAGKDLAQATQTLLSR 348
           RL +++ R+  L                   +   L++    L    + LA   +    +
Sbjct: 294 RLSLLEHRLQRLDPKRTLQQFEQRFDEMQLRLEAALSNKLHGLSRRQQQLANRLEQQSPK 353

Query: 349 HR-----HRLELLRQRVADASPDKL----------------------LSRGYSITLKDGK 381
           H+     +RL  L  R+ DA  D L                      LSRGYSIT     
Sbjct: 354 HKLALETNRLSYLATRLQDAMQDTLNQSEQRITYAAHQLETVSPLATLSRGYSITTDANN 413

Query: 382 AVTD-AASLNPGDQLVTRLAKGSFTSEV 408
            V D AA L+ GD++ TRL  G   S V
Sbjct: 414 QVIDNAAQLSVGDKINTRLRHGQVQSTV 441