Pairwise Alignments

Query, 414 a.a., ATP-dependent Clp protease ATP-binding subunit (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 426 a.a., ATP-dependent protease ATP-binding subunit (RefSeq) from Shewanella loihica PV-4

 Score =  408 bits (1049), Expect = e-118
 Identities = 219/410 (53%), Positives = 291/410 (70%), Gaps = 15/410 (3%)

Query: 3   DSKTKKKCSFCGRSENEVGFLITGMNGYICDSCATQAYEITQEALGEGRKRAGATKLNLK 62
           DS     CSFCG+S++EV  LI G + Y+CD C     +I +E +     R  + K +  
Sbjct: 9   DSGKLLYCSFCGKSQHEVRKLIAGPSVYVCDECVELCNDIIREEI-----REISPKQDQD 63

Query: 63  ELPKPVEIKKFLDQYVIGQDDAKRFLSVSVYNHYKRLLQKDSGDDVEIEKSNIIMVGSTG 122
            LP P E++  LD YVIGQ+ AK+ LSV+VYNHYKRL      D VE+ KSNI+++G TG
Sbjct: 64  RLPTPHELRAHLDDYVIGQEKAKKVLSVAVYNHYKRLKNATPKDGVELGKSNILLIGPTG 123

Query: 123 TGKTLLARTIAKLLHVPFTIVDATVLTEAGYVGEDIESILTRLLQVADYNVPEAEQGIVF 182
           +GKTLLA T+A+ L+VPFT+ DAT LTEAGYVGED+E+I+ +LLQ  DY+V +A++GIV+
Sbjct: 124 SGKTLLAETLARFLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVY 183

Query: 183 IDEIDKIARKGDNPSITRDVSGEGVQQGLLKLLEGSVVNVPPQGGRKHPDQKMIPVNTKN 242
           IDEIDKI+RK DNPSITRDVSGEGVQQ LLKL+EG+V  VPPQGGRKHP Q+ + V+T  
Sbjct: 184 IDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSK 243

Query: 243 ILFICGGAFDGIEKKIAQRLNTHV---VGYTASQKTAVIDK---NNMMQYIAPQDLKSFG 296
           ILFICGGAF G+EK I QR  +HV   +G+ A  K    DK   ++++  + P+DL  +G
Sbjct: 244 ILFICGGAFAGLEKVIEQR--SHVGTGIGFGAEVK-GEADKATISDVLLQVEPEDLVKYG 300

Query: 297 LIPEIIGRLPVLTYLNPLDRNALRAILTEPKNSIIKQYIKLFEMDGIKLTFEDSVFEYIV 356
           LIPE IGRLPVL  L  LD  AL  IL+EPKN++ KQ+  LFEM+G++L F +   + I 
Sbjct: 301 LIPEFIGRLPVLATLAELDEAALIQILSEPKNALTKQFAALFEMEGVELEFREDALKAIA 360

Query: 357 DKAVEYKLGARGLRSIVETIMMDVMFEIPSESKKEYKVTLDYAKQQLEKA 406
            KA++ K GARGLRSIVE I++D+M+++PS ++   KV +D +  + E A
Sbjct: 361 LKAMDRKTGARGLRSIVEGILLDIMYDLPS-TENVAKVVIDESVVKGESA 409