Pairwise Alignments

Query, 357 a.a., ribosomal large subunit pseudouridine synthase D (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 326 a.a., 23S rRNA pseudouridine(1911/1915/1917) synthase from Klebsiella michiganensis M5al

 Score =  200 bits (509), Expect = 4e-56
 Identities = 135/318 (42%), Positives = 181/318 (56%), Gaps = 18/318 (5%)

Query: 34  VDKGQAMVRVDKYLFERIVNASRNRIQKAAEDGFVMANGKPVKSSYKVKPLDVITVMMDR 93
           V + Q   R+D+ L E   + SR+RI++   D  V+ NG  V    K K L   T+ +D 
Sbjct: 11  VSENQLGQRLDQALAELFPDYSRSRIKEWILDQRVLVNGC-VSDKPKEKVLGGETIAID- 68

Query: 94  PRYENEII--PENIPLNIVYEDPYVMVVNKPAGLVVHPGHGNYHGTLVNALAWHMKDIPE 151
              E E+   P++IPLNIVYED  ++V+NKP  LVVHPG GN  GT++NAL  +   I  
Sbjct: 69  VEIEEEVRFQPQDIPLNIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPAI-- 126

Query: 152 YDANDPHVGLVHRIDKDTSGLLVIAKTPDAKTNLGIQFFNKTTKRRYRALVWGNVEQDEG 211
             A+ P  G+VHR+DKDT+GL+V+AKT  A+T L      +   R Y A+  G++    G
Sbjct: 127 --ADVPRAGIVHRLDKDTTGLMVVAKTIPAQTRLVESLQLREITREYEAVAIGHMTAG-G 183

Query: 212 TIVGSIARNPKDRMQMAVMSDPSMGKHAVTHYRVLERLGYVTLVECILETGRTHQIRVHM 271
           T+   I+R+P  R  MAV     MGK AVTHYR++E     T +   LETGRTHQIRVHM
Sbjct: 184 TVEEPISRHPTKRTHMAVHP---MGKPAVTHYRIMEHFRIHTRLRLRLETGRTHQIRVHM 240

Query: 272 KHIGHVLFNDERYGGH-EILKGTHFSKYKQFVNNCFDTCPRQALHAMTLGFVHPVTGEEM 330
            HI H L  D+ YGG     KG      ++F+        RQALHA  L   HP++G EM
Sbjct: 241 AHITHPLVGDQVYGGRPRPPKGAS----EEFI-TALRKFDRQALHATMLRLYHPISGIEM 295

Query: 331 YFTSELPDDMTRLIEKWR 348
            + + +P DM  LI+  R
Sbjct: 296 EWHAPIPQDMVDLIDAMR 313