Pairwise Alignments

Query, 456 a.a., Na+-dependent transporter (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 503 a.a., sodium:neurotransmitter symporter (RefSeq) from Shewanella loihica PV-4

 Score =  219 bits (557), Expect = 2e-61
 Identities = 147/471 (31%), Positives = 239/471 (50%), Gaps = 47/471 (9%)

Query: 6   RANFGSKLGVILASAGSAVGLGNIWRFPYETGNHGGAAFILIYLGCVFLLGLPILIAEFL 65
           R  + S++G ILA+ GSA+GLGNIWRFPY   ++GG AF + YL  +   G+P +I EF 
Sbjct: 3   REQWNSRVGFILAAVGSAIGLGNIWRFPYMAYDNGGGAFFIPYLFAMITAGIPFMIMEFS 62

Query: 66  IGRRSRANTAGAYQKLAP--GTHWRWVGRMGVLAAFLILSYYSVVAGWTLEYVYEALTNG 123
           +G + +  +   + +L    G    W+G   V  A +I  YY  + GWTL Y+  + +  
Sbjct: 63  LGHKIKKTSPRIFAQLGHTLGFRLEWLGWFQVFIAAVIAVYYVAIIGWTLSYLGFSFSQA 122

Query: 124 FTGKTPTEFISSFQ--------------QFSSSPWRPVLWLVLFLLVTHFIIVKGVEKGI 169
           + G  P +F  +                Q   +    + WL+ F+ V       GV+ GI
Sbjct: 123 W-GDNPNDFFFNHYLKLGNNSPSHLGEFQIGIAIAMSIAWLMTFMAV-----FTGVKGGI 176

Query: 170 EKSSKIMMPTLFIIILILVICSVTLPGAGAGIEFLLKPDFSK-VDGNVFLSAMGQAFFSL 228
           E+++KIMMP LFI++L+L+   + LPGA +G+ +L +PDFS+ +D  V+ +A GQ FF+L
Sbjct: 177 ERANKIMMPMLFIMVLVLIGRIMFLPGALSGLNYLFEPDFSRLLDAQVWSAAYGQIFFTL 236

Query: 229 SLGMGCLCTYASYFSKETNLTKTAFSVGIIDTFVAVLAGFIIFPAAFSVGIQP------- 281
           S+G   +  Y+SY   + ++   AF   +I+   ++LAG +IF     +  +        
Sbjct: 237 SVGFAIMLAYSSYLPTKADINNNAFMTVLINCGFSILAGILIFGVLGYMAEEQMKPLTEV 296

Query: 282 -DAGPSLIFITLPNVFQQAFSGVPILAYIFSVMFYVLLAMAALTSTISLHEVVTAYLHEE 340
             +G  L F+T+P     A + +P   YI   +F++ L +A L+S IS+ E VT+ + ++
Sbjct: 297 VSSGIGLAFVTIPT----AINLMP-APYILGPLFFIALVIAGLSSHISIIEAVTSAVIDK 351

Query: 341 FNFTRGKAARLVTGGCIFLGILCSLSLGVMKGFTIFGLGIFDLFDFVTAKIMLTLGGLCI 400
           F+  R  AA LV      LG L S++       T  GL + DL D+    I L L  L  
Sbjct: 352 FHVRRKPAAVLVCS----LGYLVSMAFA-----TNGGLLLLDLVDYFINNIALLLSCLLE 402

Query: 401 SIFTGWYLDKKIVWSEITNDGSLKVPVYKLIIFILRYIAPIAISLIFINEL 451
            +   W L   ++      +   +V  +   +  LR+I+P  ++ I    L
Sbjct: 403 LVIITWLLKVTVIHQHANENSEFRVGGW--FVVCLRFISPAILATILAKNL 451