Pairwise Alignments

Query, 169 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 199 a.a., RNA polymerase sigma factor RpoE from Ralstonia sp. UNC404CL21Col

 Score = 67.8 bits (164), Expect = 1e-16
 Identities = 47/156 (30%), Positives = 80/156 (51%), Gaps = 12/156 (7%)

Query: 16  KLFRLALRITLDRAEAEDVVQDTMIRVWNK----RDEWSQFESVEAYCLIVAKNLAIDRS 71
           K+ RL  R+  D AE EDV QD  I+ +      R E + +  +    +  AKN    + 
Sbjct: 32  KIIRLVSRLIRDPAEVEDVAQDAFIKAYRALPQFRGESAFYTWLYRIAVNTAKNYLATQG 91

Query: 72  QKKEAQNVEITPEMEEEPDA------NSPYDQLVHDEKM-NIINRLVNELPEKQRLIMQL 124
           ++ E+ +   T E E   D       N+P D ++H +++   +NR +  LPE+ R  + L
Sbjct: 92  RRPESSSDIDTEEAETFADGELLRDINTP-DSMLHTKQVAETVNRAMEALPEELRTAITL 150

Query: 125 RDIEGESYKKIATLLNLTEEQVKVNLFRARQKVKQR 160
           R+IEG SY++IA  +      V+  +FRAR+ + ++
Sbjct: 151 REIEGLSYEEIAEAMECPIGTVRSRIFRAREAIAEK 186