Pairwise Alignments

Query, 394 a.a., putative carbamoyl-phosphate-synthetase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 1110 a.a., carbamoyl-phosphate synthase, large subunit from Sphingomonas koreensis DSMZ 15582

 Score = 53.9 bits (128), Expect = 2e-11
 Identities = 51/254 (20%), Positives = 114/254 (44%), Gaps = 22/254 (8%)

Query: 62  GVVAYASDPAAPTAAYVCEKLGLP---TSPYTSVEILSQKDLFRRYLAEHNFNVPKYVGC 118
           GV+           A   E  G+P   TSP  ++++   ++ F   +++     P     
Sbjct: 672 GVIVQFGGQTPLNLARALEAAGIPILGTSP-DAIDLAEDRERFADLVSKLGLKQPANGIA 730

Query: 119 SSYTEALEQIKNLTLPVMIKPVDSSGSKGINKLTNVDQLKDFIEDALSYSREKRIIIEEF 178
            S  EA+   + +  PV+ +P    G + +  +  V+QL  +I+ A+  S +  ++I+++
Sbjct: 731 RSREEAIAVAERIGYPVLTRPSYVLGGRAMEIVDTVEQLDHYIQTAVQVSGDAPVLIDQY 790

Query: 179 IEKDGYQISGDAFS------VDGILKFHCFGNEYYSSSVVKDFAPLGECWPFQMKPEIIT 232
           + +D  ++  DA +      V G+L       ++   + V          P+ +  +II 
Sbjct: 791 L-RDAVEVDVDAIADGDDVVVAGVL-------QHIEEAGVHSGDSACSIPPYSLSAQIIA 842

Query: 233 ELEKDIQRLISELKMGTTAYNVEAILGKNGKLYILELGARSGGSLIPQITELATGVNMVK 292
           E+E+  + L   L +     N++  + K+G++Y++E+  R+  + +P + + A G  + K
Sbjct: 843 EIERQTEALARGLNV-KGLMNIQFAV-KDGEVYLIEVNPRASRT-VPFVAK-AIGAPIAK 898

Query: 293 YVIKAALGEDCSEI 306
              +   GE   ++
Sbjct: 899 IASRVMAGEKLKDL 912



 Score = 39.7 bits (91), Expect = 4e-07
 Identities = 48/201 (23%), Positives = 79/201 (39%), Gaps = 28/201 (13%)

Query: 120 SYTEALEQIKNLTLPVMIKPVDSSGSKGINKLTNVDQLKDFIEDALSYSREKRIIIEEFI 179
           S  +AL  ++ + LP +I+P  + G  G     N ++    +   L  S    ++IEE +
Sbjct: 151 SEADALAALEKVGLPAIIRPSFTMGGSGGGIAYNREEFLTIVRSGLDLSPTTEVLIEESL 210

Query: 180 ------EKDGYQISGD-AFSVDGILKFHCFGNEYYSSSVVKDFAPLGECWPFQMKPEIIT 232
                 E +  +   D A  +  I      G     S  V     L             T
Sbjct: 211 LGWKEYEMEVVRDRNDNAIIICSIENIDAMGTHTGDSITVAPALTL-------------T 257

Query: 233 ELEKDIQR-----LISELKMGTTAYNVE-AILGKNGKLYILELGARSGGSLIPQITELAT 286
           + E  I R     ++ E+ + T   NV+ A+  K+G+L ++E+  R   S    +   AT
Sbjct: 258 DKEYQIMRNASIAVLREIGVETGGSNVQFAVNPKDGRLIVIEMNPRVSRS--SALASKAT 315

Query: 287 GVNMVKYVIKAALGEDCSEIE 307
           G  + K   K A+G    EIE
Sbjct: 316 GFPIAKVAAKLAVGYTLDEIE 336