Pairwise Alignments

Query, 493 a.a., cysteinyl-tRNA synthetase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 459 a.a., cysteinyl-tRNA synthetase (RefSeq) from Shewanella loihica PV-4

 Score =  345 bits (885), Expect = 2e-99
 Identities = 201/492 (40%), Positives = 288/492 (58%), Gaps = 42/492 (8%)

Query: 5   LTIYNTLDRKKELFVPLHAPHVGMYVCGPTVYGDAHLGHARPAITFDVLFRYLTHLGYKV 64
           L +YN+L R+KE F P+    VGMYVCG T+Y   H+GH R  + FD++ RYL ++GY V
Sbjct: 2   LKLYNSLTRQKEEFKPIQPGKVGMYVCGVTIYDLCHIGHGRTFVAFDMIVRYLRYIGYDV 61

Query: 65  RYVRNITDVGHLEHDADEGEDKIAKKARLEELEPMEVVQYYLNR--YHKAMEALNVLSPS 122
            + RNITDV          +DKI K+A  E  E  + +   L +  YH   +ALN+  P 
Sbjct: 62  NFHRNITDV----------DDKIIKRAT-ENGESCDALTERLTQEMYHD-FDALNMKRPD 109

Query: 123 IEPHASGHIIEQIQLVQKILDAGYAYESE-GSVYFDVAKYNKDYHYGKLSGRNLDDVLNT 181
            EP A+ H+ E I++V+++L+  +AY ++ G V F VA + +   YG+LSG+NLD +   
Sbjct: 110 FEPRATQHMPEIIEMVERLLERDHAYIADNGDVLFSVASFPE---YGRLSGQNLDQLQAG 166

Query: 182 TRDLDGQSEKRNPADFALWKKAQPEHIMRWPSPWSDGFPGWHAECTAMGRKYLGEHFDIH 241
            R ++    KR+P DF LWK ++P     W SPW  G PGWH EC+AM  K+LGEHFDIH
Sbjct: 167 AR-VEVDENKRDPMDFVLWKMSKPGE-PTWDSPWGPGRPGWHIECSAMNSKHLGEHFDIH 224

Query: 242 GGGMDLIFPHHECEIAQSVASQGDDMVHYWMHNNMITINGTKMGKSLGNFITLDEFFNGT 301
           GGG DL FPHHE EIAQS  +     V+YWMH  M+ ++  KM KSL NF T+ +     
Sbjct: 225 GGGSDLQFPHHENEIAQSCCAHDTPYVNYWMHTGMVMVDKEKMSKSLNNFFTIRD----- 279

Query: 302 HKLLAQAYTPMTIRFFILQAHYRSTVDFSNEALQASEKGLQRLIEAIEGLDKITPAATTS 361
             +LA  Y   T+R+F+L  HYRS +++S + L+ ++  L+RL  A++GLD    AA  S
Sbjct: 280 --VLAH-YDASTVRYFLLSGHYRSQLNYSEDNLKQAKAALERLYTALKGLDLSVEAAPAS 336

Query: 362 EGINVKELRAKCYEAMNDDLNTPIVIAQLFEGARIINNINAGN---ATISAEDLKDLKET 418
           E +      AK  EAM+DD NTP   + LF+ AR IN +   +   A+     +K L + 
Sbjct: 337 EYV------AKFKEAMDDDFNTPEAYSVLFDMAREINRLKVDDLAAASALGVSMKQLGDV 390

Query: 419 FHLFCFDIMGLKEEKGSSDGREAAYGKVVDMLLEQRMKAKANKDWATSDEIRNTLTALGF 478
             +   D+ G  + +GS D  E A    ++ L+ +R +A+  KDWA +D  R+ L ALG 
Sbjct: 391 LGILEQDVDGFFKGEGSDD--EVAQ---IEALIAERNRARTEKDWAAADVARDGLNALGV 445

Query: 479 EVKDTKDGFEWR 490
            ++D  +G  WR
Sbjct: 446 ILEDGPEGTTWR 457