Pairwise Alignments

Query, 391 a.a., RND efflux system for fusidic acid, chlorpromazine, and thioridazine, membrane fusion component (from data) from Bacteroides thetaiotaomicron VPI-5482

Subject, 389 a.a., efflux transporter periplasmic adaptor subunit from Pedobacter sp. GW460-11-11-14-LB5

 Score =  326 bits (835), Expect = 8e-94
 Identities = 177/375 (47%), Positives = 242/375 (64%), Gaps = 14/375 (3%)

Query: 2   KSRIVFFAFCLA-LLSSCGNKGNDTGKVPE---------YAVQELQKTTANLMKAYPATI 51
           K   +FF+  +  LL+SCGN  ND  K            Y V  +      L   YPATI
Sbjct: 3   KVTTLFFSVSIGMLLASCGN--NDAAKKAAAAAAAGPQAYPVFTVNTQNTTLDSDYPATI 60

Query: 52  KGRQDVEIRPQVSGFITKLCVDEGATVRKGQLLFIIDPTQYEAAVRTAKASVATAEAAVN 111
           +G Q+++IRP+V GFI K+ VDEGA V+KGQLLF I+  QYE  VRTA+A++++AEA VN
Sbjct: 61  EGIQNIDIRPKVDGFIEKILVDEGAVVKKGQLLFTINAPQYEQQVRTARAAISSAEADVN 120

Query: 112 TQQMTVDNKIELNKKQIISDYDLSMAKNSLAQAQAQLAQAKAQLTTAQQNYSFTQVKSPS 171
             Q+TV+    L +K IIS YDL  A+ +L   +A LAQAKA+L  AQ N  +T + SP 
Sbjct: 121 AAQLTVNKTKPLVEKDIISKYDLDAAQLTLQSRRAALAQAKAELVNAQVNLGYTSITSPV 180

Query: 172 DGVINDIPYRLGALVSPSMATPMTTVSEIDEVYVYFSTTEKELLAMTKT--GGTIKEEIS 229
           DGV+  IP+R G+LVS S   P+TTVS   +VY YFS  EK+LL  + T  G T+ +++ 
Sbjct: 181 DGVVGSIPFRNGSLVSSSSTQPLTTVSNTSKVYAYFSLNEKQLLDFSNTYKGNTLAQQMK 240

Query: 230 KIPAIKLQLIDGTTYDAEGKVDAITGVIDQSTGSVSMRAIFPNKEHMLRSGGTANVLIPY 289
            IPA+ L L DG+ Y   GK+++I G I+ STGS S+RA FPN   +L++G +A+V IP 
Sbjct: 241 NIPAVSLVLADGSIYAQNGKIESINGQINTSTGSASLRATFPNPVFLLKNGASASVRIPQ 300

Query: 290 NMENVISIPQSATVEIQDKKFVYVLQPDNTVKYTEIGIFNLDNGKEYLVTSGLNPGDKIV 349
           ++EN I +PQ +T+++Q KKFVY+L     V  T+I +  L  G  Y+VT GL  GDK++
Sbjct: 301 HVENAILVPQKSTIDLQGKKFVYILGDSAKVINTQIEVMELAKGNFYVVTKGLKAGDKVI 360

Query: 350 IEGVQSLKDGQKIQP 364
           +EG QSLKDG KI+P
Sbjct: 361 LEGFQSLKDGTKIKP 375