Pairwise Alignments

Query, 391 a.a., RND efflux system for fusidic acid, chlorpromazine, and thioridazine, membrane fusion component (from data) from Bacteroides thetaiotaomicron VPI-5482

Subject, 360 a.a., efflux transporter periplasmic adaptor subunit from Pedobacter sp. GW460-11-11-14-LB5

 Score =  192 bits (487), Expect = 2e-53
 Identities = 123/382 (32%), Positives = 205/382 (53%), Gaps = 23/382 (6%)

Query: 1   MKSRIVFFAFCLAL-LSSCGNKGNDTGKVPEYAVQELQKTTANLMKAYPATIKGRQDVEI 59
           MK  ++    C  L ++ C +K  +  +V  YAV    K   +  K Y + IK  +++E+
Sbjct: 1   MKRVVMCLGLCTLLYVTGCTSKKEEKEEVATYAVTTPLKMDTSFTKEYVSQIKSVRNIEV 60

Query: 60  RPQVSGFITKLCVDEGATVRKGQLLFIIDPTQYEAAVRTAKASVATAEAAVNTQQMTVDN 119
           R Q  G++  + VDEG  V+ GQLLF I P   ++ +  A+A   +AE            
Sbjct: 61  RAQEKGYLQNIYVDEGQHVKAGQLLFKIMPKAAQSELLKAQAETKSAE------------ 108

Query: 120 KIELNKKQIISDYDLSMAKNSLAQAQAQLAQAKAQLTTAQQNYSFTQVKSPSDGVINDIP 179
            IEL   +++SD ++ ++KN LA A+A+L  A A+ + A+ + S T++++P +G I+ IP
Sbjct: 109 -IELENTKLLSDKNI-VSKNELAMAKAKLQSANAETSLAKFHLSNTEIRAPFEGTIDRIP 166

Query: 180 YRLGALVSPSMATPMTTVSEIDEVYVYFSTTEKELLAMTKTGGTIKEEISKIPAIKLQLI 239
            +LG+LV       +T++S+  +V+ YF+ +E E L    T     ++      + L L 
Sbjct: 167 LKLGSLVDEGAL--LTSLSDNSQVFAYFNVSEPEYLNYQSTAKAKGQQ-----EVSLLLA 219

Query: 240 DGTTYDAEGKVDAITGVIDQSTGSVSMRAIFPNKEHMLRSGGTANVLIPYNMENVISIPQ 299
           +     ++GKV+ I    D  TG+++ RA F N +++LR+G T  + +   ++N + IPQ
Sbjct: 220 NNELLKSKGKVEVIESEFDNETGNIAFRARFNNSDNLLRNGETGKIQMVVPLKNALVIPQ 279

Query: 300 SATVEIQDKKFVYVLQPDNTVKYTEIGIFNLDNGKEYLVTSGLNPGDKIVIEGVQSLKDG 359
            AT +IQDK +V+V+  +N V    I I   D    Y+V  G+  GDKI++EGVQ +KD 
Sbjct: 280 KATYDIQDKTYVFVIDKNNKVHSRAITIAG-DLPDLYIVGDGITTGDKILLEGVQKVKDD 338

Query: 360 QKIQPITPAQKEANYQQHLKDQ 381
            KI       +E   Q  LK +
Sbjct: 339 DKIAFKFQQPQEVMKQLRLKTE 360