Pairwise Alignments

Query, 391 a.a., RND efflux system for fusidic acid, chlorpromazine, and thioridazine, membrane fusion component (from data) from Bacteroides thetaiotaomicron VPI-5482

Subject, 400 a.a., efflux transporter periplasmic adaptor subunit from Pedobacter sp. GW460-11-11-14-LB5

 Score =  246 bits (628), Expect = 8e-70
 Identities = 136/346 (39%), Positives = 202/346 (58%), Gaps = 3/346 (0%)

Query: 29  PEYAVQELQKTTANLMKAYPATIKGRQDVEIRPQVSGFITKLCVDEGATVRKGQLLFIID 88
           P   V  +  +T      YPA+I+G  D+++RPQVSG++  + V+EGA V  GQ LF I+
Sbjct: 50  PALPVSAINSSTETTYIEYPASIQGAVDIDVRPQVSGYLQSVLVNEGAYVTAGQTLFKIN 109

Query: 89  PTQYEAAVRTAKASVATAEAAVNTQQMTVDNKIELNKKQIISDYDLSMAKNSLAQAQAQL 148
              Y  A+  AKAS+  AEAA+   Q+ VD    L + +++SD+ L  AK +   AQA  
Sbjct: 110 ENPYREALNNAKASLHAAEAAILNAQLEVDKLTPLVQNKVVSDFQLKTAKTAYKIAQANA 169

Query: 149 AQAKAQLTTAQQNYSFTQVKSPSDGVINDIPYRLGALVSPSMATPMTTVSEIDEVYVYFS 208
            QAKA + +AQ N  +T VK+   G I  IP + G+LVSP+    +T +S+I EV+VYF+
Sbjct: 170 EQAKASVASAQINLGYTNVKATVSGYIGRIPKKQGSLVSPTDQVALTQLSDIHEVHVYFA 229

Query: 209 TTEKEL--LAMTKTGGTIKEEISKIPAIKLQLIDGTTYDAEGKVDAITGVIDQSTGSVSM 266
             E +         G +  + I  +PA++L L D + Y  +GK+D I G  D++TG++++
Sbjct: 230 LAENDFNNFNANYPGKSPADRIKHLPAVELLLADNSAYPIKGKIDMIDGQFDKNTGAITL 289

Query: 267 RAIFPNKEHMLRSGGTANVLIPYNMENVISIPQSATVEIQDKKFVYVLQPDNTVKYTEIG 326
           RA FPN   +LRSG T  + +    ++ I +PQS+TVE+QDK FV+ +   + VK   I 
Sbjct: 290 RASFPNASGILRSGNTGKIRLGLQHDDAILVPQSSTVEMQDKVFVFTVGDSSKVKKQAIT 349

Query: 327 IFNLDNGKEYLVTSGLNPGDKIVIEGVQSLKDGQKIQPITPAQKEA 372
           I     G+ YLV  G+  GD+IV+ GV  L++G  IQP   A K A
Sbjct: 350 IVG-KAGENYLVKDGVKAGDQIVLSGVDKLQEGMVIQPQKAADKVA 394