Pairwise Alignments

Query, 391 a.a., RND efflux system for fusidic acid, chlorpromazine, and thioridazine, membrane fusion component (from data) from Bacteroides thetaiotaomicron VPI-5482

Subject, 408 a.a., hemolysin D from Herbaspirillum seropedicae SmR1

 Score =  167 bits (422), Expect = 6e-46
 Identities = 109/356 (30%), Positives = 181/356 (50%), Gaps = 11/356 (3%)

Query: 12  LALLSSCGNKGNDTGKVPE----YAVQELQKTTANLMKAYPATIKGRQDVEIRPQVSGFI 67
           +A+L++C   G+      +    Y V + Q+    L    P         +IRPQV G I
Sbjct: 8   VAVLAACSRSGDQPKPTAQAEVGYVVVKAQRQA--LTTELPGRTTAYLAADIRPQVGGII 65

Query: 68  TKLCVDEGATVRKGQLLFIIDPTQYEAAVRTAKASVATAEAAVNTQQMTVDNKIELNKKQ 127
            K    EG+TV+ GQ L+ IDP  Y+AA  +A+AS+  AEA + + ++  +   ELNK  
Sbjct: 66  QKRLFKEGSTVKAGQPLYQIDPASYQAAYDSARASLLKAEATLASSKLKAERYAELNKID 125

Query: 128 IISDYDLSMAKNSLAQAQAQLAQAKAQLTTAQQNYSFTQVKSPSDGVINDIPYRLGALVS 187
            +S  D   A+++L Q QA +   KA + TA  N  +T++ SP  G I       GALV+
Sbjct: 126 AVSKQDNDDAQSTLRQNQADVEVQKAAVQTAAINLQYTKILSPISGRIEKSAVTPGALVT 185

Query: 188 PSMATPMTTVSEIDEVYVYFSTTEKELLAMTK--TGGTIKEEISKIPAIKLQLIDGTTYD 245
            S  T +TTV +ID +YV  + +  +LL + +    G I++       +K+ L DG+TY+
Sbjct: 186 ASQTTALTTVQQIDPIYVDVTQSTVDLLRLRRELASGQIRKSGENAAQVKIVLEDGSTYE 245

Query: 246 AEGKVDAITGVIDQSTGSVSMRAIFPNKEHMLRSGGTANVLIPYNM-ENVISIPQSATVE 304
             GK++     +D  TG +++RA+ PN + +L  G     ++   + ++ +  PQ A   
Sbjct: 246 RPGKLEFTGLSVDTGTGMITLRAVVPNPDGVLLPGAYVRAVLEEGVDDHALLAPQKAVSR 305

Query: 305 IQ-DKKFVYVLQPDNTVKYTEIGIFNLDNGKEYLVTSGLNPGDKIVIEGVQSLKDG 359
            Q       VL  D  V+   + +     G  + V+ GL  GDK++++G+Q ++ G
Sbjct: 306 DQTGAATALVLGADGKVQQRLVSVARA-VGNNWWVSRGLKEGDKLIVDGLQKVRTG 360