Pairwise Alignments

Query, 391 a.a., RND efflux system for fusidic acid, chlorpromazine, and thioridazine, membrane fusion component (from data) from Bacteroides thetaiotaomicron VPI-5482

Subject, 402 a.a., hemolysin D from Herbaspirillum seropedicae SmR1

 Score =  159 bits (401), Expect = 2e-43
 Identities = 111/392 (28%), Positives = 189/392 (48%), Gaps = 20/392 (5%)

Query: 3   SRIVFFAFCLALLSSCGNK-GNDTGKVP--EYAVQELQKTTANLMKAYPATIKGRQDVEI 59
           +R+       A L +CG K     G +P  E +V  +      +    P  ++  +  ++
Sbjct: 8   TRLTMTVAIAAALVACGQKPAAQGGPMPPSEVSVVTIAPQRVAITNELPGRVEAFRVAQV 67

Query: 60  RPQVSGFITKLCVDEGATVRKGQLLFIIDPTQYEAAVRTAKASVATAEAAVNTQQMTVDN 119
           R +V+G + K    EG+ V++GQ+LF IDP QY+A++ +A+A++A A+A +    +T   
Sbjct: 68  RARVAGIVQKRVFKEGSEVKEGQVLFKIDPAQYKASLESAQATLARAQANLTQTTLTAQR 127

Query: 120 KIELNKKQIISDYDLSMAKNSLAQAQAQLAQAKAQLTTAQQNYSFTQVKSPSDGVINDIP 179
              L +   +S  +   A  +  QA+A +A  KA + TA  N  +  V SP  G I    
Sbjct: 128 YKPLVEVNAVSKQEYDNAVAAQKQAEADVAAGKAAVQTASLNLGYATVTSPISGRIGRAL 187

Query: 180 YRLGALVSPSMATPMTTVSEIDEVYVYFSTTEKELLAMTK--TGGTIKEEISKIPAIKLQ 237
              GALV    AT +  V ++D VYV  + +  +LL + +    G +K       ++ L+
Sbjct: 188 VTEGALVGQGDATQLALVQQLDPVYVNVTQSSADLLKLQQAMAAGQLKSVGDNKASVTLE 247

Query: 238 LIDGTTYDAEGKVDAITGVIDQSTGSVSMRAIFPNKEHMLRSGGTANVLIPYNM-ENVIS 296
           L +G  Y   GK+      +D++TGSVS+RA FPN + +L  G      I   + E  + 
Sbjct: 248 LENGQAYPLPGKLLFSDISVDENTGSVSLRAEFPNPKRLLLPGTYVRAKIEQAVDEQALL 307

Query: 297 IPQSATVEIQDKKFVYVLQPDNTVKYTEIGIFNLDNGKEYLVTSGLNPGDKIVIEGVQSL 356
           +PQ A V       V V+  +N V+   +       G  + V  GL  GD++++EG+Q +
Sbjct: 308 VPQQAVVRDAGGSTVMVVNAENKVEPRPVKTGGA-RGNNWQVLDGLKEGDRVIVEGLQKV 366

Query: 357 KDGQKIQPI-------------TPAQKEANYQ 375
           + G  ++P+              PA++EA+ Q
Sbjct: 367 RPGATVKPVQWNPAGAPAQASGQPAKQEASAQ 398