Pairwise Alignments

Query, 572 a.a., Outer membrane binding protein for chondroitin sulfate and hyaluronic acid (susD-like) (from data) from Bacteroides thetaiotaomicron VPI-5482

Subject, 509 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  116 bits (291), Expect = 2e-30
 Identities = 166/598 (27%), Positives = 250/598 (41%), Gaps = 127/598 (21%)

Query: 1   MKALKITIIALLAGFSMVSC--DFLDKEPTKLTPENYFNTPAEANSFLTGIYAILSQPT- 57
           MK   +   A++   S+ SC  D       ++T +NY+ T A+A + L  IY   +  + 
Sbjct: 2   MKKNFLYFTAVVLSVSLGSCKKDLEVNPQDRITLDNYYKTQADAFTGLVAIYDRFAYQSG 61

Query: 58  -FYGGDYMYLVAGDDLSHYGGSGRGPASTGLICNNATTSDNAVTA----FWYALYSGINR 112
             Y    +  VAGDD    GG   GP+    +    T + NA T      W   YSGI R
Sbjct: 62  GLYDKSAVMSVAGDDQLAGGG---GPSDINDLQVMQTYTLNASTGPQGYLWSRGYSGIYR 118

Query: 113 ANMFLENIDKVNGFDAGVKEQYIAEARFLRAFYYFNLVECWGDVPFKTVSTQSVTNLNIP 172
            N+ L+ I  +   DA +K +YIAEA+ +RA +YF+LV  + +VP    +       N+ 
Sbjct: 119 VNVLLQKIVDIP-MDATLKARYIAEAKTMRAAFYFDLVTFFKNVPIIEGTVDPKDLYNVV 177

Query: 173 RTDKQEIYDFIISEMADAAETGLKSASDLAYKPGRISQSTAWGILARVYLFRAGEHYREG 232
           +     +Y ++  ++ADA   GL +    A + GR+++  A  +L +V L+         
Sbjct: 178 QAAPAAVYAYVEKDLADAI-PGLPNTVPAATEGGRLTKGAAQALLGKVLLY--------- 227

Query: 233 RNATQAEKKDYFERASFYAQKVMTA--GHKLAANY---WDPFIDMCSDKYNTTANESIWE 287
           +   QA   D F   +  A  V  +  G+KL  N+   W P     S+K+N   +E+I E
Sbjct: 228 QKKWQA-AADQFAVVNGTAPGVSPSVYGYKLIPNFGDLWKP-----SNKFN---SEAIIE 278

Query: 288 AEFAGNNTSDTQAEGRI-GNIIGL-AGPDLSSKSDVTGAKDPGYGYAFIYSTPKLYNLY- 344
              +  +  +  A G   GN++ +  GP   SK+ V+ A D   GY+F+  T   ++   
Sbjct: 279 FVHSNKSNGNWSAAGNSEGNLLSITTGPRGYSKT-VSTAPDYFSGYSFLVFTKAFFDFIH 337

Query: 345 --------VNNGDTKRFNWSIAPFEYKEAGGKNTGVTHREFEQGKLAEVMSQYGQQRGTY 396
                   V N D+ + N  IA +    AG  NTG                        Y
Sbjct: 338 FDPRNAATVANLDSLQTN-GIAKY---TAGYNNTG------------------------Y 369

Query: 397 QYADDTEKTTATKNFSRMCGKYRREYEADKKDKNYTSINFPI----LRYADVLLMIAEAE 452
            +A     TT                   +   N   +NF I    +R AD  LM AEA 
Sbjct: 370 FFAKYMGLTT-------------------QAAANTPELNFGIDEYEIRLADTYLMEAEAL 410

Query: 453 NEANN--GPTTLAYQCMKEVRERAGLNELPDMTQEEFRQTVKDERAMELCFEYTRRFDLI 510
             A    G  + AY  +  VR R GLN +  +TQ      ++ ER +EL  E  R  DL+
Sbjct: 411 MNAGAAVGAGSRAYALLNAVRARVGLNPVA-VTQ----ANIEKERRLELAGEGQRFPDLV 465

Query: 511 RWGEYVKNMRALVTEAQSGNNWTQGPTNVYTYFNISSTYNYFPIPDAEMSVNKDITQN 568
           RWG      +A  T A  G               I+  +  FPIP  E++ N  I QN
Sbjct: 466 RWG------KAAATLASKG--------------FIAGRHEVFPIPQGELN-NTKIEQN 502