Pairwise Alignments

Query, 572 a.a., Outer membrane binding protein for chondroitin sulfate and hyaluronic acid (susD-like) (from data) from Bacteroides thetaiotaomicron VPI-5482

Subject, 507 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  115 bits (288), Expect = 4e-30
 Identities = 145/593 (24%), Positives = 238/593 (40%), Gaps = 111/593 (18%)

Query: 1   MKALKITIIALLAGFSMVSC--DFLDKEPTKLTPENYFNTPAEANSFLTGIYAILSQPTF 58
           MK   I ++  +A     SC      K  + LT +N F T ++A + +  +YA L  P+ 
Sbjct: 1   MKKYNIILLLTIALVIQFSCKKSLEPKVYSILTEKNAFVTKSDAIAGVNAVYARLKGPSV 60

Query: 59  YGGDYMYLVAGD--------DLSH--YGGSGRGPASTGLICNNATTSDNA-VTAFWYALY 107
            G +Y Y             DL H  YGG        G + N    S N  +   W  +Y
Sbjct: 61  -GDNYDYWTVRHFALTDLTTDLGHCDYGGD------PGQLSNIQWNSSNGLILEDWRQIY 113

Query: 108 SGINRANMFLENIDKVNGFDAGVKEQYIAEARFLRAFYYFNLVECWGDVPFKTVSTQSVT 167
             I  AN+ + NI  +       K +++AE RFLRA  Y ++ + WG     T    +  
Sbjct: 114 KLIANANVAISNITPMKSITDAEKSKFLAEIRFLRAIAYMDITDIWGPSVLITEKEMAAK 173

Query: 168 NLNIPR--TDKQEIYDFIISEMA-DAAETGLKSASDLAYKP---GRISQSTAWGILARVY 221
           + +     T   ++  ++I E+   AA   L   ++  Y     GR ++  A G+LA++Y
Sbjct: 174 DYSAKPQLTSLADMNKYLIGELEYAAANLPLNYVNNPIYPNNDVGRATKGAALGMLAKLY 233

Query: 222 LFRAGEHYREGRNATQAEKKDYFERASFYAQKVMTAG-HKLAANYWDPFIDMCSDKYNTT 280
           L                 +   +++A+ Y Q+V+    + L   Y   F +      NT 
Sbjct: 234 L-----------------RDHQWQKAADYCQQVIDLKVYDLYPTYAGLFAES-----NTW 271

Query: 281 ANESIWEAEFAGNNTSDTQAEGRIGNIIGLAGPDLSSKSDVTGAKDPGYGYAFIYSTPKL 340
             E+I+    +  N + T+     G    L  P L+ +            + +   T   
Sbjct: 272 CVENIFSV-LSDANVNGTELLNHFGP---LEHPVLTER------------WQYYAVTWDF 315

Query: 341 YNLYVNNGDTKRFNWSIAPFEYKEAGGKNTGVTHREFEQGKLAEVMSQYGQQRGTYQYAD 400
           YN + N  D K+  ++       E  G +  +  +    G +A     Y     T +YAD
Sbjct: 316 YNSFNNADDRKKMFFA-------EYTGTDNLIHKQAPTLGAIAPAGVLYMPNVATSKYAD 368

Query: 401 DTEKTTATKNFSRMCGKYRREYEADKKDKNYTSINFPILRYADVLLMIAEAENEANNGPT 460
                T                        Y   +  ILRYAD+LL  AEA NE N GP+
Sbjct: 369 PNGANTY-----------------------YDGHSVNILRYADILLSRAEALNEINGGPS 405

Query: 461 TLAYQCMKEVRERAGLNE--LPDMTQEEFRQTVKDERAMELCFEYTRRFDLIRWGEYVKN 518
           T + + + +V+ R+   E  L ++ Q  FR  +  ER  EL +E  RR DL+R G+Y + 
Sbjct: 406 TESIELVNKVKRRSHATELVLANLNQSTFRDAILQERGWELFYEGKRRADLVRMGKYEQV 465

Query: 519 MRALVTEAQSGNNWTQGPTNVYTYFNISSTYNYFPIPDAEMSVNKDITQNNPG 571
           + A +       +  Q P +            +FP P +++S+N ++  NN G
Sbjct: 466 VNAYLARIGKSPS-IQMPRD-----------QFFPYPTSQVSINPNL--NNAG 504