Pairwise Alignments

Query, 572 a.a., Outer membrane binding protein for chondroitin sulfate and hyaluronic acid (susD-like) (from data) from Bacteroides thetaiotaomicron VPI-5482

Subject, 536 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  145 bits (366), Expect = 4e-39
 Identities = 160/598 (26%), Positives = 251/598 (41%), Gaps = 88/598 (14%)

Query: 1   MKALKITIIALLAGFSMVSCD-FLDKEPTKLTPEN-YFNTPAEANSFLTGIYAILSQPTF 58
           MK LK T ++L A  S VSC  FL + P  L  EN Y+ T A+A + +  +Y  L+Q   
Sbjct: 1   MKILKYTALSL-AILSTVSCKKFLTENPDGLLQENEYYKTQADAINAVNAVYFSLNQGVA 59

Query: 59  YGGDYMY----------LVAGDDLSHYGGSGRGPASTGLICNNATTSDNAVTAFWYALYS 108
                +           +   DD    G          L   + ++ +  V   W   Y+
Sbjct: 60  GASGILQTPYNTLFNTGMNMADDDEDPGPGATNADVRSLSVLSHSSGNLRVYEIWQQHYA 119

Query: 109 GINRANMFLENIDKVNGFDAGVKEQYIAEARFLRAFYYFNLVECWGDVPFKTVSTQSV-- 166
            I RAN+ ++ I  +  FDA +K + IAEA+FLRA YYFNLV  +G VP  T   + +  
Sbjct: 120 TIRRANIAIDRIPTIT-FDATLKSRLIAEAKFLRALYYFNLVRLFGGVPLITAQQEFIKA 178

Query: 167 TNLNIPRTDKQEIYDFIISEMADAAETGLKSASDLAYKPGRISQSTAWGILARVYLFRAG 226
           ++  I ++  Q++Y  I  ++ +AA      A+ ++   GR ++  A  +LA+VYL  A 
Sbjct: 179 SDYAIAKSTPQQVYGQIEKDLIEAAID--LPATYVSPNVGRATKGAAKALLAKVYLTEAS 236

Query: 227 EHYREGRNATQAEKKDYFERASFYAQKVMTAGHKLAANYWDPFIDMCSDKY---NTTANE 283
           +      N T       +  A   A++V++       NY     D  +D +        E
Sbjct: 237 QPL----NITAK-----YADAVRLAEEVLSPADGGTGNYGYGLFDNYADAFLPATKNGKE 287

Query: 284 SIWEAEFAGNNT---SDTQAEGRIGNIIGLAGPDLSSKSDVTGAKDPGYGYAFIYSTPKL 340
            I+  +F  N+    ++  +   + N+ GL+G         T   D  +          +
Sbjct: 288 HIFSVQFKSNSQGQGNNETSRAILSNVPGLSGNYAHMVRYYTVGTDKYF---------SI 338

Query: 341 YNLYVNNGDTKRFNWSIAPFEYKEAGG-KNTGVTHREFEQGKLAEVMSQYGQQRGTYQYA 399
           Y LY    D +R    +  F+    G   + G+  + +                  Y+  
Sbjct: 339 YKLY-TPADKRRDATFVKAFQSPTNGNLYSLGIDGKTY-----------------VYKTT 380

Query: 400 DDTEKTTATKNFSRMCGKYRREYEADKKDKNYTSINFPILRYADVLLMIAEAENEANNGP 459
           D       T  F++          A+       + N  ILRYAD+LL+ AEAENE  NGP
Sbjct: 381 DPVPTAELTPFFNKFWDPNSTTLTAE------AAANVNILRYADLLLIHAEAENEL-NGP 433

Query: 460 TTLAYQCMKEVRERAGLNEL-----PDMTQEEFRQTVKDERAMELCFEYTRRFDLIRWGE 514
           +  A+  +  VR RAGL  L     PD  +  FR  +  +R +EL +EY R FDLIR  +
Sbjct: 434 SAKAFSSLNRVRGRAGLGALSLINTPD--KNAFRDALYLDRRLELVYEYERWFDLIREKD 491

Query: 515 YVKNMRALVTEAQSGNNWTQGPTNVYTYFNISSTYNYFPIPDAEMSVNKDITQNNPGW 572
              N   + +  + G         +Y            PIP AE+  N  + + NPGW
Sbjct: 492 AAGNSIFVSSLHKVGKTIATEKNRLY------------PIPQAEIE-NNPLLKQNPGW 536