Pairwise Alignments

Query, 572 a.a., Outer membrane binding protein for chondroitin sulfate and hyaluronic acid (susD-like) (from data) from Bacteroides thetaiotaomicron VPI-5482

Subject, 620 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  179 bits (453), Expect = 4e-49
 Identities = 154/498 (30%), Positives = 226/498 (45%), Gaps = 97/498 (19%)

Query: 1   MKALKITIIALLAGFSMVSCD-FLDKEPTK-LTPENYFNTPAEANSFLTGIYAILSQPTF 58
           MK + IT+I   A  +M SC   LD  PT+ +TP NY+NT AE  + L G+Y  L+    
Sbjct: 1   MKRIYITLIFFAA--AMCSCKKVLDTTPTEFVTPTNYYNTAAELQTALNGVYRTLATSGL 58

Query: 59  YGGDYMYLVAGDDLSHYGGSGRGPASTGLICNNAT----------TSDNA-VTAFWYALY 107
           Y   Y + +                ST  +C  AT           S+NA VT  W  LY
Sbjct: 59  YQAIYSFHLN--------------ISTDEVCTRATGVPQETMYNYDSNNASVTTMWRDLY 104

Query: 108 SGINRANMFLENIDKVNGFDAGVKEQYIAEARFLRAFYYFNLVECWGDVPFKTVSTQSVT 167
            GI RAN+ +ENI+K    D   +     E  FLRA++YF L   +GDVP     T S+ 
Sbjct: 105 FGIERANLLIENINKP-AMDESKRSLIKGETLFLRAYFYFILASNFGDVPLILKPTGSIQ 163

Query: 168 NLNIPRTDKQEIYDFIISEMADAAETGLKSASDLAYKPGRISQSTAWGILARVYLFRAGE 227
           ++N+ RT ++++++ ++++M  A        +      G ++Q+    ILA+V L  AG 
Sbjct: 164 DVNVARTPQKDVFNQVLADMTTAEGLLASQKTTKVVSSGVVTQTAVQAILAKVCLRMAGF 223

Query: 228 HYREGRNATQAEKKDYFERASFYAQKVMTAG-HKLAANYWDPFIDMCSDKYNTTANESIW 286
              +            +     +  KV+ +G H L  NY   FI++  DKY+    ES+W
Sbjct: 224 PIND---------ISKYNDVLTWTNKVINSGEHALNPNYQQIFINIAQDKYD--IKESMW 272

Query: 287 EAEFAGNNTSDTQA-EGRIGNIIGLAGPDLSSKSDVTGAKDPGYGYAFIYSTPKLYNLY- 344
           E EF G+N +   A  G +GN +G    DL+           G    ++  + KL++ Y 
Sbjct: 273 EVEFYGSNVTIYGAGGGALGNYMGTPSSDLNI----------GGSAGWLTVSKKLFDSYD 322

Query: 345 VNNGDTK--------RFNWSIAPFEYKEAGGKNTGVTHREFEQGKLAEVMSQYGQQRGTY 396
           V+   T         R +W+ A + +       TG+                        
Sbjct: 323 VDPASTANPKVSFDLRRDWNCANYNW------GTGI------------------------ 352

Query: 397 QYADDTEKTTATKNFSRMCGKYRREYE-ADKKDKNYTSINFPILRYADVLLMIAEAENEA 455
                 +    T  +    GK+RREYE A  KDKN T  N+PI+RYADVLLM AEAEN  
Sbjct: 353 ---PGVKSAPITNPWLMYAGKFRREYEVATPKDKNTTPQNYPIIRYADVLLMRAEAENYI 409

Query: 456 NNGPTTLAYQCMKEVRER 473
            NGPT  AY  + ++R R
Sbjct: 410 -NGPTPQAYSDINQIRRR 426



 Score = 65.1 bits (157), Expect = 8e-15
 Identities = 39/102 (38%), Positives = 60/102 (58%), Gaps = 8/102 (7%)

Query: 478 ELP-DMTQEEFRQTVKDERAMELCFEYTRRFDLIRWGEYVKNMR-----ALVTEAQSGNN 531
           +LP ++++++F++ ++DERA ELC+E  RR DLIRWG +  +M+     AL     +  N
Sbjct: 520 DLPANLSKDDFQKAIRDERARELCYEGVRRQDLIRWGNFYNDMKDFLAYALANGVPNLTN 579

Query: 532 WTQGPTNVYTYFNISSTYN-YFPIPDAEMSVNKDITQNNPGW 572
              G T   T  N  S  N   PIP  ++S+N  +TQ NPG+
Sbjct: 580 GQPGATGPATPANNVSPRNLLLPIPQYDISLNTSLTQ-NPGY 620