Pairwise Alignments

Query, 572 a.a., Outer membrane binding protein for chondroitin sulfate and hyaluronic acid (susD-like) (from data) from Bacteroides thetaiotaomicron VPI-5482

Subject, 544 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  114 bits (284), Expect = 1e-29
 Identities = 156/604 (25%), Positives = 243/604 (40%), Gaps = 93/604 (15%)

Query: 1   MKALKITIIALLAGFSMVSC--DFLDKEPTKLTPENYFNTPAEA-----NSFLTGIYAIL 53
           MK  KI I+ L A F + SC  D   + P + T  +    P +      + +L GIYA L
Sbjct: 1   MKLYKILIVVLFAVF-ISSCEKDVFTQLPVERTDLSDIFNPKDREGILIDEYLAGIYAQL 59

Query: 54  SQPTFYGGDYMYLVAGDDLSHYGGSGRGPASTGLICNNATTSDNAVTAFWYALYSGINRA 113
                  G+ +     DD     G     A           SD      W   Y  I R 
Sbjct: 60  PNGFNRIGNNLLDAGTDDA--LSGDISVTAVDKFKTGQWGPSDLPENP-WVTSYMAIRRV 116

Query: 114 NMFLENIDKVNGFDAGVKEQYIAEARFLRAFYYFNLVECWGDVPFKTVSTQSVT-NLNIP 172
           N+ L NI   +G     K+    +AR LR  +YF LV+ WG VP        +  NL +P
Sbjct: 117 NILLANIG-TSGIPDVKKDALRFQARALRIIFYFELVKRWGGVPLIGDKVFVLNDNLQLP 175

Query: 173 RTDKQEIYDFIISEMADAAETGLKSASDLAYKPGRISQSTAWGILARVYLFRAGEHYREG 232
           R  + E  D+I++E     +     A+  A + GR+S+     + +R+ L+ A   Y   
Sbjct: 176 RNTRAECVDYILAECEFLKDK--LPATLTAGEVGRLSKGVVLALKSRLLLYEASPLYNPS 233

Query: 233 RNATQAEKKDYFERASFYAQKVMTAGHKLAANYWDPFIDMCSDKY-------NTTANESI 285
            +  +     +   A      +    + L AN+   F    + ++       + T+ ES+
Sbjct: 234 NDVVK-----WQAAAKAADDLIKLNSYSLEANFGTMFTTRSNKEFILAYQQADNTSIESL 288

Query: 286 WEA---EFAGNNTSD-TQAEGRIGNIIGLAGPDLSSKSDVTGAKDPGYGYAFIYS--TPK 339
            E    + AG   +D TQ      N++  A P L+ K+   G    GY  A  Y    P+
Sbjct: 289 NEPPGYKRAGQGITDPTQ------NLVD-AFPMLNGKA--IGEAGSGYNAADPYKDRDPR 339

Query: 340 LYNLYVNNGDTKRFNWSIAPFEYKEAGGKNTGVTHREFEQGKLAEVMSQYGQQRGTYQYA 399
            Y    +NG    F+W  +P E    GGKN                 ++ G   GT    
Sbjct: 340 FYLTIFHNG----FSWLGSPVE-TFVGGKNN----------------TRIGIGMGT---- 374

Query: 400 DDTEKTTATKNFSRMCGKYRREY---EADKKDKNYTSINFPILRYADVLLMIAEAENEAN 456
               KT          G Y R++          +  + NFPI RYA++LL  AEA+NE  
Sbjct: 375 ----KT----------GYYMRKFMITSGSATGFSSATHNFPIFRYAEILLNYAEAQNEVL 420

Query: 457 NGPTTLAYQCMKEVRERAGLNEL---PDMTQEEFRQTVKDERAMELCFEYTRRFDLIRW- 512
             P    Y+ + ++R+R G   +     + + + R  +++ER +EL FE  R +D+ RW 
Sbjct: 421 AAPDASVYKVINDLRKRGGSTGVFAQGSLDKAQMRAIIRNERRIELAFEEHRFWDIRRWK 480

Query: 513 -GEYVKN--MRALVTEAQSGNNWTQGPTNVYTYFNISSTYNY-FPIPDAEMSVNKDITQN 568
             E V N  ++ +     +   +T  P  V       +   Y +P+P  E+  N  + Q 
Sbjct: 481 IAENVLNGSLKGMKIIQNADKTFTYDPNVVVQTVTFDAAKMYLYPVPYLEIQKNSALVQ- 539

Query: 569 NPGW 572
           NPGW
Sbjct: 540 NPGW 543