Pairwise Alignments

Query, 572 a.a., Outer membrane binding protein for chondroitin sulfate and hyaluronic acid (susD-like) (from data) from Bacteroides thetaiotaomicron VPI-5482

Subject, 500 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  105 bits (261), Expect = 6e-27
 Identities = 77/237 (32%), Positives = 117/237 (49%), Gaps = 10/237 (4%)

Query: 4   LKITIIALLAGFSMVSC-DFLDKEPT-KLTPENYFNTPAEANSFLTGIYAILSQPTFYGG 61
           +K  I+ +L    +  C D+LD  PT + T + Y+NT  +A + L G YA +     Y  
Sbjct: 1   MKKYILFILISVFLFGCKDYLDVTPTDRFTQDTYWNTKVQAEAALNGTYAAIYY-NVYAA 59

Query: 62  DYMYLVAGDDLSHYGGSGRGPASTGLICNNATTSDNAVTAFWYALYSGINRANMFLENID 121
           + +YL A    ++   +     S GL  +NA T     T  W   Y GI RAN  L NID
Sbjct: 60  NSIYLDALSPNTYQYNNDYNIISRGL--HNAATGYFNET--WNGSYKGIGRANNVLANID 115

Query: 122 KVNGFDAGVKEQYIAEARFLRAFYYFNLVECWGDVPFKTVSTQSVTNLNIPRTDKQEIYD 181
           KVN  D  +KE+Y AEA++LRA YY  L   +G  P  T +T   T  N+PR    E+  
Sbjct: 116 KVN-MDGALKERYKAEAKYLRALYYIPLWNLFGGAPLITDATNYETQANLPRNTADELLA 174

Query: 182 FIISEMADAAETGLKSASDLAYKPGRISQSTAWGILARVYLFRAGEHYREGRNATQA 238
            I+ ++ +A+   +   +      GR ++  A  + ARV L+   + ++E   A +A
Sbjct: 175 QILKDLTEASSGTVLPLTYSGVDKGRATRGAALALKARVLLY--AKRWKEAAEAAKA 229



 Score = 62.0 bits (149), Expect = 5e-14
 Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 10/138 (7%)

Query: 432 TSINFPILRYADVLLMIAEAENEANNGPTTLAYQCMKEVRERAGLNELPD-MTQEEFRQT 490
           + +N  +LRYADVLLM AEA+NE ++GP    +  +  +R RA +  +P  + QEE R  
Sbjct: 367 SELNLILLRYADVLLMYAEAKNE-DSGPDQSVFDALNLIRARAKMPNIPSTLGQEELRAE 425

Query: 491 VKDERAMELCFEYTRRFDLIRWGEYVKNMRALVTEAQSGNNWTQGPTNVYTYFNISSTYN 550
           ++ ER +EL  E    +D+ RW         +  +  +GN        + +    ++   
Sbjct: 426 IRHERRVELAGEGLYYYDIRRW--------RIADQLLNGNITNSAGARIDSRLFDANKDY 477

Query: 551 YFPIPDAEMSVNKDITQN 568
            +P+P   +  N  + QN
Sbjct: 478 LWPVPSIAIQNNPALKQN 495