Pairwise Alignments

Query, 572 a.a., Outer membrane binding protein for chondroitin sulfate and hyaluronic acid (susD-like) (from data) from Bacteroides thetaiotaomicron VPI-5482

Subject, 631 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  175 bits (444), Expect = 4e-48
 Identities = 155/491 (31%), Positives = 229/491 (46%), Gaps = 79/491 (16%)

Query: 5   KITIIALLAGFS-MVSCD-FLDKEPTKL-TPENYFNTPAEANSFLTGIYAILSQPTFYGG 61
           KI +  L+ G + +VSC   ++ EP    T +N+F+   EA S   G+Y I+S  + YG 
Sbjct: 10  KILLAGLIFGATAIVSCKKAVETEPYSFFTSDNFFSNETEAYSATLGVYDIMSDRSTYGF 69

Query: 62  DYMYLVAGD-DLSHYGGSGRGPASTGLICNNATTSDNAVTAFWYALYSGINRANMFLENI 120
           +   +   D D+    GS        +   N T    A    W A Y GI+RAN+ L  I
Sbjct: 70  NIPLVYDNDTDIGQTEGSNLADDYRVIPHYNGTPERAAFLDTWTAFYKGIDRANVVLARI 129

Query: 121 DKVNGFDAGVKEQY------IAEARFLRAFYYFNLVECWGDVPFKTVSTQSVTNLNIPRT 174
            ++  + +G + Q       +AEA+FLRAFYY  LV  WGDVPFKT  +Q+  +  +P T
Sbjct: 130 PQMGIYSSGTQAQKDALNRNMAEAKFLRAFYYSELVHYWGDVPFKTTPSQTGDDFKLPVT 189

Query: 175 DKQEIYDFIISEM---ADAAETGLKSASDLAYKPGRISQSTAWGILARVYLFRAGEHYRE 231
           D+ EIY FI+ EM   ADA  T L +         RI++  A  +LARV L+  G  Y  
Sbjct: 190 DRYEIYKFILKEMQEAADALPTALPTDE-------RINKWAAKAMLARVALYAGG--YSL 240

Query: 232 GRNATQAEK----KDYFERASFYAQKVMTAG-HKLAANYWDPFIDMCSDKYNTTANESIW 286
            R + Q E+    ++Y+  A      V+    +KL  +Y   F + C      T  E+I+
Sbjct: 241 SRTSKQMERPANYREYYTLAKQQIDDVIAQNQYKLNPSYSQVFKNQCQGVLEPT--ENIF 298

Query: 287 EAEFAGNNTSDTQAEGRIGNIIGLAGPDLSSKSDVTGAKDPGYGYAFIYSTP--KLYNLY 344
           +  F  ++ + T      GN +G+                       IY TP   L   +
Sbjct: 299 QIAFFNSDNNTTS-----GNALGV-----------------------IYGTPVTALGVYF 330

Query: 345 VNNGDTKRFNWSIAPFEYKEAGGKNTGVTHREFEQGKLAEVMSQYGQQRGTYQYADDTEK 404
             NG T     ++ PF    A    TG   R+F        +   G ++          +
Sbjct: 331 STNGRT----LAVRPFYDSFA----TGDARRDFSIANY--TIDALGNKQ---------PQ 371

Query: 405 TTATKNFSRMCGKYRREYEADKK-DKNYTSINFPILRYADVLLMIAEAENEANNGPTTLA 463
           T A  + S    K+ REY+  +  ++  T IN+ ++RYAD+LLM AE ENE NNGP TLA
Sbjct: 372 TLARADESWRAAKWSREYQKQELIERGGTRINYVVMRYADLLLMRAEVENELNNGPNTLA 431

Query: 464 YQCMKEVRERA 474
           Y+ + +VR RA
Sbjct: 432 YEAINQVRRRA 442



 Score = 53.5 bits (127), Expect = 2e-11
 Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 12/119 (10%)

Query: 457 NGPTTLAYQCMKEVRERAGLNELPDMTQEEFRQTVKDERAMELCFEYTRRFDLIRWG--- 513
           +G T +A    K     A L     ++++ F + V+ ERA EL +E  RR DLIRW    
Sbjct: 522 SGATAVATLLPKPTSTNADLQS--GLSKDAFFKAVQQERAWELSYEGLRRADLIRWNALK 579

Query: 514 EYVKNMRALVTEAQSGNNWTQGPTNVYTYFNISSTYNYFPIPDAEMSVNKDITQNNPGW 572
           + + +    V   +S  N+   P N      I+  +  FPIP +E+ VNK+I Q NPG+
Sbjct: 580 QSIDDTNTKVKAIRSNYNY-PAPANF-----ITGKHELFPIPLSEIDVNKNIKQ-NPGY 631