Pairwise Alignments

Query, 572 a.a., Outer membrane binding protein for chondroitin sulfate and hyaluronic acid (susD-like) (from data) from Bacteroides thetaiotaomicron VPI-5482

Subject, 542 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  134 bits (336), Expect = 1e-35
 Identities = 168/603 (27%), Positives = 250/603 (41%), Gaps = 106/603 (17%)

Query: 6   ITIIALLAGFSMVSCDFLDKEPTKLTPENYFNTPAEANS-----FLTGIYAILSQPTFYG 60
           I II LL  F   S  F  +   ++T +  F+ P + N+     FL G Y +L  P +Y 
Sbjct: 8   IAIICLLFAFGC-SKKFEAEPLDRITGDLIFD-PLDKNADYAKQFLNGTYLLL--PDWYN 63

Query: 61  G-DYMYLVAGDD--LSHYGGSGRGPASTGLICNNATTSDNAVTAFWYALYSGINRANMFL 117
             D  +L AG D  +    G+      TG I +     D      W   Y GI RAN+FL
Sbjct: 64  RIDGSFLDAGTDDAVPSRIGTQAEFYRTGRISSTTLPDD-----VWSKNYLGIRRANLFL 118

Query: 118 ENIDKVNGFDAGVKEQYIAEARFLRAFYYFNLVECWGDVPFKTVSTQSVT-NLNIPRTDK 176
             +D V    A +K Q+ AEARFLRA++YF LV+ WG VP       ++  ++N+PR   
Sbjct: 119 SKVDVVPT-TAVLKTQFKAEARFLRAYFYFELVKRWGGVPLIGDKVYTINDDINVPRNTL 177

Query: 177 QEIYDFIISEMADAAETGLKSASDLAYKPGRISQSTAWGILARVYLFRAGEHYREGRNAT 236
            E Y +I++E+ DA ++ L   +      GR +   A  + +RV L+ A        N  
Sbjct: 178 DECYAYIVAEL-DAIKSSLLPYAITDGDWGRANIGAAMALKSRVLLYAASPLSNPTNNIQ 236

Query: 237 QAEKKDYFERASFYAQKVMTAGHKLAANYWDPFIDMCSDKYNTTANESIWEAEFAGNNTS 296
           +      +  A+  A  V   G+ L  ++           +N T N    E  F   N  
Sbjct: 237 K------WALAAQAAADVKALGYTLVTDW--------VANFNATKNT---EFIFIKQNVL 279

Query: 297 DTQAEGRIGNIIGLAGPDLSSKS----------DVTGAKDPGYGY----AFIYSTPKLYN 342
           +T  E   G I  L G  L+S S          D     D G  Y     ++   P+L  
Sbjct: 280 NTNIEINNGPIGYLQGLGLTSPSQNLVDAFLMLDGKAISDAGSTYDSNNPYLNRDPRLTA 339

Query: 343 LYVNNGDTKRFNWSIAPFEYKEAGGKNTGVTHREFEQGKLAEVMSQYGQQRGTYQYADDT 402
             ++NG     NW   P E  E G    G    +                          
Sbjct: 340 TIMHNGK----NWLGRPVETFEGGQDKPGGNRTQ-------------------------- 369

Query: 403 EKTTATKNFSRMCGKYRREYEADKKDKNYTSINFPILRYADVLLMIAEAENEANNGPTTL 462
              T T  + R   K+  ++E      N    +  +LRYA++LL  AEA NE+      +
Sbjct: 370 ---TRTGYYLR---KFMGKFETSTTYTNQAH-HVILLRYAEILLNHAEALNESGGAVADI 422

Query: 463 AYQCMKEVRERAGL----NEL----PDMTQEEFRQTVKDERAMELCFEYTRRFDLIRWGE 514
               +  +R+RAG+    N L      ++++E R+ +++ER +EL FE  R +DL RW  
Sbjct: 423 VNNLVL-IRKRAGILPGSNNLYGLSLTLSKDELRKIIQNERRIELAFEEHRTWDLRRWKL 481

Query: 515 YVKNMRALVTEAQSGNNWTQGPTNVYTYFNISST-----YNYFPIPDAEMSVNKDITQNN 569
               +   V   Q   N   G    YTYFN ++        ++PIP AE+  N  + Q N
Sbjct: 482 AEIELNKPVRGVQIIKN---GTAYSYTYFNAANAVFDTKMYWYPIPQAEILANNKMVQ-N 537

Query: 570 PGW 572
           PGW
Sbjct: 538 PGW 540