Pairwise Alignments

Query, 572 a.a., Outer membrane binding protein for chondroitin sulfate and hyaluronic acid (susD-like) (from data) from Bacteroides thetaiotaomicron VPI-5482

Subject, 580 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  125 bits (313), Expect = 6e-33
 Identities = 162/626 (25%), Positives = 246/626 (39%), Gaps = 101/626 (16%)

Query: 1   MKALKITIIALLAGFSMVSC--DFLDKEP-TKLTPENYFNTPAEANSFLTGIYAILSQPT 57
           MK  KI    LL     +SC  D+L++ P   ++ ++ F  PA A  F    Y  L    
Sbjct: 1   MKNYKIFTAVLLFTLFSISCKKDYLERTPGVAISEDDIFADPALAARFADNAYNYLITKY 60

Query: 58  FYGGDYMYLVAGDDLSHYGGSGRGPAST---GLICNNAT-TSDNAVTAFWYALYSGINRA 113
               D+    A        G+  G  ++   GL  +++   S N +   W  +Y+GI   
Sbjct: 61  VRFNDHRGCTAQASDEAVSGNSEGSVTSLNRGLYHDHSNGPSLNDIYGVWKLMYAGIAVQ 120

Query: 114 NMFLENIDKVN--------GFDAGVKEQYIAEARFLRAFYYFNLVECWGDVPFKTVSTQS 165
           N  L  I +V          FDA   E    E RFLRA  YF L + +G VP        
Sbjct: 121 NKMLARIGEVPLPPNASVPVFDAKRVE---GEMRFLRALSYFELTKRFGGVPIVDKVYGV 177

Query: 166 VTNLNIPRTDKQEIYDFIISEMADAAETGLKSASDLAYKP---GRISQSTAWGILARVYL 222
             ++N+PR+   ++  FI+ ++  A     K  +D  Y P   GR +   A  + ARV L
Sbjct: 178 YDDINLPRSTFAQVTAFILKDLEVAI---TKLGTDTEYGPSNYGRPTIGAALALKARVLL 234

Query: 223 FRAGEHYREGRNATQAEKKDYFERASFYAQKVMTAGHKLA-------ANYWDPFIDMCSD 275
           + A      G +      K  ++ A+  A +VM   + LA       A Y D      S 
Sbjct: 235 YAASPLNNPGND------KSKWQAAADAAAEVMKGANGLARQTYALQATYGDLLNLPNST 288

Query: 276 KYNTTANESIWEAEFAGNNTSDTQAEGRIGNIIGLAGP-----DLSSKSDVTGAKDPGYG 330
           +Y     +       AG    D       G   G   P     D+   ++     DP  G
Sbjct: 289 EYIMIRIKG--PTPLAGEMMQDFSMSPASGGAQGQMNPTQNHVDMYEMANGKSITDPTSG 346

Query: 331 Y----AFIYSTPKLYNLYVNNGDTKRFNWSIAPFEYKEAGGKNTGVTHREFEQGKLAEVM 386
           Y     ++   P+ YN  + N       W                       QG+  E+ 
Sbjct: 347 YDPQKPYLNREPRFYNNIIYND----LAW-----------------------QGRKIEMW 379

Query: 387 SQYGQQRGTYQYADDTEKTTATKNFSR-MCGKYRREYEADKKDKNYTSINFPILRYADVL 445
           +       T    D    TT T   +R  C KY  E          T +N+   RYA+++
Sbjct: 380 TTKDADNNTIFGRD--YSTTITYTATRYYCKKYWPEVYRTVGGST-TLLNYIYFRYAEMM 436

Query: 446 LMIAEAENEANNGPTTLA-YQCMKEVRERAGLNE---------LPDMTQEEFRQTVKDER 495
           L  AEA+NEAN      + Y  + ++R+RAG+ +           +MTQ+E R  ++ ER
Sbjct: 437 LNYAEAQNEANYTVNDASVYNVLVDIRKRAGIAKGTGTYGYGLKDNMTQDEMRTVIRHER 496

Query: 496 AMELCFEYTRRFDLIRWGEYVKN----MRALVTEAQSGNNWTQ-----GPTNVYTYFNIS 546
           A+EL FE  R +D++RW    +     M+ +     S   +T      GPT   T+   +
Sbjct: 497 AIELAFEDHRWYDIMRWKIGAQTIAVPMKGMDVVKNSNGTFTYTPIVLGPTFQKTW---T 553

Query: 547 STYNYFPIPDAEMSVNKDITQNNPGW 572
              N +PIP AE+  +K +   NPGW
Sbjct: 554 EAQNLYPIPRAEVYKSKGVLTQNPGW 579