Pairwise Alignments

Query, 572 a.a., Outer membrane binding protein for chondroitin sulfate and hyaluronic acid (susD-like) (from data) from Bacteroides thetaiotaomicron VPI-5482

Subject, 666 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  220 bits (560), Expect = 2e-61
 Identities = 166/477 (34%), Positives = 243/477 (50%), Gaps = 65/477 (13%)

Query: 5   KITIIALLAGFSMVSCD-FLDKEPT-KLTPENYFNTPAEANSFLTGIYAILSQPTFYGGD 62
           KI    L+    + SC  FL   PT  L PE Y+++ A+  + L G+Y  L     YG  
Sbjct: 3   KILYFLLIISTGLGSCKKFLATVPTDNLLPEEYYDSEAKLLNALAGVYYPLETSALYGN- 61

Query: 63  YMYLVAGDDLSHYGGSGRGPASTGLICNNATTSDNAVTAFWYALYSGINRANMFLENIDK 122
             +L +  ++S      R   +TG+   N   SD +V A W   Y GI RANM + NI+ 
Sbjct: 62  --FLSSDYNISDEAFYQRSAQTTGVSVYNFDYSDASVAALWQQCYVGIERANMLIANINV 119

Query: 123 VNGFDAGVKEQYIAEARFLRAFYYFNLVECWGDVPFKTVSTQ--SVTNLNIPRTDKQEIY 180
            N      +   + EA FLR +YYF L   +GDVP KT+ T+  S  ++ +PRT  +++Y
Sbjct: 120 AN-IAENKRAPILGEALFLRGYYYFLLASNYGDVPLKTLPTKSPSAEDVQVPRTPLKQVY 178

Query: 181 DFIISEMADAAETGLKS-ASDLAYKPGRISQSTAWGILARVYLFRAGEHYREGRNATQAE 239
             I+ +M  A   GL S  +DL +  GR+S++T  GILARV L  AG   ++        
Sbjct: 179 AQILEDMTKA--EGLTSKITDLGFS-GRVSKTTVEGILARVCLTMAGAPLKD-------- 227

Query: 240 KKDYFERASFYAQKVMTAG-HKLAANYWDPFIDMCSDKYNTTANESIWEAEFAGNNTSDT 298
            +  +  A  +A KV  +G H+L  +Y   F++M  D Y+    +S+WE EF GN     
Sbjct: 228 -ESKYADAKAWALKVKESGEHRLNPSYKQLFVNMHQDLYD--IKDSMWEVEFKGNGADGL 284

Query: 299 QAEGRIGNIIGLAGPDLSSKSDVTG-AKDPGYGYAFIYSTPKLYNLYVNNGDTKRFNWSI 357
            + GR+G++ G+           TG     GY Y F+++T KL+NL+   GD +R +W++
Sbjct: 285 GSNGRVGSLGGI------QMQVATGIGLKIGYSYGFLHTTAKLFNLF-QPGDLRR-DWNL 336

Query: 358 APFEYKEAGGKNTGVTHREFEQGKLAEVMSQYGQQRGTYQYADDTEKTTATKNFSRMCGK 417
           A F Y                   +A    +Y      Y Y       TA + ++R   K
Sbjct: 337 AQFNY-------------------IATYPDRY-----YYNY------YTAAQIYNRDAAK 366

Query: 418 YRRE-YEADKKDKNYTSINFPILRYADVLLMIAEAENEANNGPTTLAYQCMKEVRER 473
           +RRE Y  D K++N T IN+P+LRY+DVLLM+AEAEN   NGPT LAY  + +VR R
Sbjct: 367 FRREAYVLDNKNQNTTPINYPLLRYSDVLLMLAEAENHL-NGPTALAYDAINQVRRR 422



 Score = 79.3 bits (194), Expect = 4e-19
 Identities = 42/97 (43%), Positives = 62/97 (63%), Gaps = 6/97 (6%)

Query: 478 ELPDMTQEEFRQTVKDERAMELCFEYTRRFDLIRWGEYVKNMRALVTE--AQSGNNWTQG 535
           +L  ++Q  F+Q ++DER+ ELCFE  R+ DLIRWG++V+ M ++  E  A +G  ++ G
Sbjct: 574 DLSGLSQSSFQQAIEDERSRELCFEALRKPDLIRWGKWVETMNSIGAEIRANAGATFSYG 633

Query: 536 PTNVYTYFNISSTYNYFPIPDAEMSVNKDITQNNPGW 572
                   N+ S +  FPIP AE++VNK  TQ NPGW
Sbjct: 634 G---LAGSNVLSKHQLFPIPAAEITVNKQATQ-NPGW 666