Pairwise Alignments

Query, 572 a.a., Outer membrane binding protein for chondroitin sulfate and hyaluronic acid (susD-like) (from data) from Bacteroides thetaiotaomicron VPI-5482

Subject, 587 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  130 bits (326), Expect = 2e-34
 Identities = 171/615 (27%), Positives = 255/615 (41%), Gaps = 91/615 (14%)

Query: 1   MKALKITIIALLAGF----SMVSCDFLDKEP-----TKLTPENYFNTPAEANSFLTGIYA 51
           MK  K  II  L GF    ++ SC  ++ EP       L  ++       A  FL  +Y 
Sbjct: 21  MKNFKQYIILALFGFQVAMAITSCKKVETEPRDWIQADLVWDDQDKNGTVAGFFLNSVYN 80

Query: 52  ILSQPTFYG---GDYMYLVAGDDLSHYGGSGRGPASTGLICNNATTSDNAVTAFWYALYS 108
            +  P+ +    GD++   +GD +       R         N   ++ N    +W   Y 
Sbjct: 81  YI--PSGFNRIDGDFLDAASGDAIP-----SRNNTQVEYFTNGRISTLNNPDPYWGNSYY 133

Query: 109 GINRANMFLENIDKVNGFDAGVKEQYIAEARFLRAFYYFNLVECWGDVPF---KTVSTQS 165
           GI  AN+FL NI+ V    A  K+ + AEAR++RA  YF L++ +G VP    K  + + 
Sbjct: 134 GIRAANIFLANINVVP-IAALTKQYWRAEARYIRALLYFELLKRYGGVPLIGNKVFTLED 192

Query: 166 VTNLNIPRTDKQEIYDFIISEMADAAETGLKSASDLAYKP---GRISQSTAWGILARVYL 222
             NL +PR    +  ++IISE  DA +  L+  +   Y     GRI +  A  +  R YL
Sbjct: 193 --NLELPRNSFADCINYIISE-CDAVKDSLRLETGANYTTSDWGRIPKGAAIALKCRAYL 249

Query: 223 FRAGEHYREG---RNATQAEKKDYFERASFYAQKVMTAGHKLAANYWDPFIDMCSDKYNT 279
           + A   Y  G    N T      Y    +   QKV+ A  +L A  +     + ++ + T
Sbjct: 250 YAASPLYNGGGVESNGTLKVLTGYPTADASRWQKVIDAAVELNALNYYQLQPVFNNVFLT 309

Query: 280 TANESIWEAEFAGNNT--SDTQAEGRIGNIIGLAGPDLSSKSDVTGAKDPGYGYAFIYST 337
             N  +  ++ A  NT    T A        G   P LS+     G   P         T
Sbjct: 310 NKNTEVILSKQAAVNTGIETTNAPS------GYGAPALSN-----GRTSP---------T 349

Query: 338 PKLYNLYVNNGDTKRFNWSIAPFEYKEAGGKNTGV--THREFEQGKLAEVMSQYGQQRGT 395
             L N +     T R    I       A G N     T+R+                RG 
Sbjct: 350 ADLVNAF-----TMRNGLPIT----DAASGYNPAAPYTNRDLRLDYTIFYNGVNWLNRGV 400

Query: 396 YQYADDTEKTTATKNFSRMCGKYRREYEAD-KKDKNYT--SINFPILRYADVLLMIAEAE 452
             Y    +K   T   +R  G Y R++  +   +  YT  S NF I RYA+++L  AEA 
Sbjct: 401 QTYEGGLDKPGGTTVQTR-TGYYLRKFMGNFATNSTYTNQSHNFIIFRYAEIILNYAEAL 459

Query: 453 NEANNGPTTLAYQCMKEVRERAGLNE-------LP-DMTQEEFRQTVKDERAMELCFEYT 504
           NE   G T  A + +  +R RAG+         +P  ++QE  R  + +ER +EL FE  
Sbjct: 460 NEV--GRTEDAVKQIILLRTRAGITAGANTRYGIPVGISQESMRTLIMNERRVELAFEEH 517

Query: 505 RRFDLIRWGEYVKNMRALVTEAQSGNNWTQGPTNVYTYFNISSTYNYF-------PIPDA 557
           R +D+ RW    K   A+++ A +G   T+   N +TY NI    + F       P+P A
Sbjct: 518 RFWDIRRW----KIAPAVLSGALNGTKITKNANNTFTYENIPVVTSIFTNKLYHMPVPYA 573

Query: 558 EMSVNKDITQNNPGW 572
           E + N  + QN  GW
Sbjct: 574 ETTKNSQLLQNE-GW 587