Pairwise Alignments

Query, 572 a.a., Outer membrane binding protein for chondroitin sulfate and hyaluronic acid (susD-like) (from data) from Bacteroides thetaiotaomicron VPI-5482

Subject, 506 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  161 bits (407), Expect = 7e-44
 Identities = 171/592 (28%), Positives = 260/592 (43%), Gaps = 118/592 (19%)

Query: 8   IIALLAGFSMVSCDFLDKEPTK-LTPENYFNTPAEANSFLTGIYAIL------SQPT--- 57
           ++  +A  S+ +C  LD+ P   ++PE ++ T  +A S +  IY  +      +QP    
Sbjct: 6   LLLAIAVASLSACVKLDENPKSFISPEQFYKTAGDAVSAVNAIYYPMVDNSTGAQPIYNR 65

Query: 58  -FYGG-DYMYLVAGDDLSHYGGSGRGPASTGLICNNATTSDNA-VTAFWYALYSGINRAN 114
            FY G D++     DDL    G G   A    +      S N  +   W   Y GIN+AN
Sbjct: 66  LFYTGLDFLT----DDLD--AGPGSPNAEVRALAKLTHASTNLRIQQIWTEHYEGINKAN 119

Query: 115 MFLENIDKVNGFDAGVKEQYIAEARFLRAFYYFNLVECWGDVP--FKTVSTQSVTNLNIP 172
           + LE I  +   D  +K + + EA+FLRAFYYFNLV  +GDVP   K  +  S+  L +P
Sbjct: 120 IALERIPAIE-MDGKLKNRLLGEAKFLRAFYYFNLVRLYGDVPLLLKDQTQLSIAELQVP 178

Query: 173 RTDKQEIYDFIISEMADAAETGLKSASDLAYKPGRISQSTAWGILARVYLFRAGEHYREG 232
           RT K+++Y  II+++  AA    K+ S    + GR ++  A  +L++VYL R     R+ 
Sbjct: 179 RTPKEQVYLQIINDLETAASL-FKAGS--GGEAGRATEGAAVALLSKVYLTR-----RDW 230

Query: 233 RNATQAEKKDYFERASFYAQKVMTAGHKLAANYWDPFIDMCSDKYNTTANESIWEAEFAG 292
            NA +            YA+ V+T  +  A   +D +  +    Y     E I+ A+  G
Sbjct: 231 ANAVK------------YAEAVITGSYGYA--LFDDYAQVFLPAYK-NGKEHIFSAQIKG 275

Query: 293 NNTSDTQAEGRIGNIIGLAGPDLSSKSDVTGAKDPGYGYAFIYSTP------KLYNLYVN 346
           +  S        G++I     D+  +S V G K   YG    + T        LY LY  
Sbjct: 276 STIS-------TGHLI--TSSDI--RSGVPGLKG-SYGNQLAFYTVGSDNFFSLYKLY-- 321

Query: 347 NGDTKRFNWSIAPFEYKEAGGKNTGVTHREFEQGKLAEVMSQYGQQRGTYQYADDTEKTT 406
           +G  KR   S   +      GK     +                        A       
Sbjct: 322 SGKDKRKRVSFVTYYTSPTDGKKYATIN------------------------APGDSVPF 357

Query: 407 ATKNFSRMCGKYRREYEADKKDKNYTS-----INFPILRYADVLLMIAEAENEANNGPTT 461
             KN+                D NY S      N  ILR+A+V+L+ AEAENE  NGPT+
Sbjct: 358 INKNW----------------DPNYASTGNSDANMNILRFAEVILIDAEAENEL-NGPTS 400

Query: 462 LAYQCMKEVRERAGLNEL-PDMTQEEFRQTVKDERAMELCFEYTRRFDLIRWGEYVKNMR 520
            AY  + ++R+RAGL +L   +T+++FR +V  +R +EL  E  R FDLIR     +   
Sbjct: 401 KAYTSINKIRKRAGLADLTTGLTKDQFRDSVYLDRRLELVGECHRYFDLIR-----QTGT 455

Query: 521 ALVTEAQSGNNWTQGPTNVYTYFNISSTYNYFPIPDAEMSVNKDITQNNPGW 572
            +      G         +    N+++ +  + IP  E+  N  +TQ NPGW
Sbjct: 456 EVTGVGPEGKGILLKNLKLVGKTNVAARHYLYAIPQGEIDRNPKLTQ-NPGW 506