Pairwise Alignments

Query, 572 a.a., Outer membrane binding protein for chondroitin sulfate and hyaluronic acid (susD-like) (from data) from Bacteroides thetaiotaomicron VPI-5482

Subject, 507 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  104 bits (259), Expect = 1e-26
 Identities = 150/580 (25%), Positives = 233/580 (40%), Gaps = 90/580 (15%)

Query: 5   KITIIALLAGFSMVSCDFLDKEPTKLTPENYFNTPAEANSFLTGIYAILSQPTFYG-GDY 63
           K    A LA FS  + +         + +N++ T  +A     G+Y   +   FYG G +
Sbjct: 6   KYMAFAALAFFSSCTKELDIVPEGSPSAQNFWKTKEDAIKAEAGMYENYNAEDFYGRGMF 65

Query: 64  MYLVAGDDLSHYGGSGRGPASTGLICN-NATTSDNAVTAF-WYALYSGINRANMFLENID 121
            ++ A DD+     +GR       I N N T      T   W   Y+ I RAN  + N+ 
Sbjct: 66  WFINASDDMV----TGRNKPEADNIKNFNRTYVGGGYTETQWSMRYAIIKRANDIIINVP 121

Query: 122 KVNGFDAGVKEQYIAEARFLRAFYYFNLVECWGD----VPFKTVSTQSVTNLNIPRTDK- 176
            ++  D  +K+Q I +A F     YF L   +G+    VP   V+ +S  +L I R    
Sbjct: 122 AIS-MDEALKKQIIGDAYFNAGLVYFQLAANYGNDKAGVPI--VTPESDPSLPIARAKNV 178

Query: 177 QEIYDFIISEMADAAETGLKSASDLAYKPGRISQSTAWGILARVYLFRAGEHYREGRNAT 236
            E YD+IIS +  AA+     ++      G+  ++ AW  L++VYL+             
Sbjct: 179 NENYDYIISLLLKAADNLPLFSAMKPADYGKAHKTAAWAYLSKVYLY------------- 225

Query: 237 QAEKKDYFERASFYAQKVMTAGHKLAANYWDPFIDMCSDKYNTTANESIWEAEFAGNNTS 296
              KKDY   A+ YA  V+T+G     N    F D+     N  + E IW       +  
Sbjct: 226 ---KKDY-ANAAKYADMVITSGQHDLVN--TGFADVFKAS-NNWSKEYIW-------SVV 271

Query: 297 DTQAEGRIGNIIGLAGPDLSSKSDVTGAKDPGYGYAFIYSTPKLYNLYVNNGDTKRFNWS 356
            T + G  G    L G  L++K     A     G+ +   T +LY+ Y   GD +R    
Sbjct: 272 CTPSGGGTGWGSKLPGVMLTNK-----AWGIYNGWGYYLPTKELYDSY-ETGDQRREATI 325

Query: 357 IAPFEYKEAGGKNTGVTHREFEQGKLAEVMSQYGQQRGTYQYADDTEKTTATKNFSRMCG 416
           + P +     G       R F +   A    Q+ +    + YA+    T    N      
Sbjct: 326 LKPGDKFMFFG-----AERSFTKDAGATSNYQFKKYMEPFSYANPI-PTHVNPN------ 373

Query: 417 KYRREYEADKKDKNYTSINFPILRYADVLLMIAEAE---NEANNGPTTLAYQCMKEVRER 473
                      D   T +N P++RYA+VLL+ AEA    + A  G T L      ++R R
Sbjct: 374 ----------GDNGTTDLNVPLMRYAEVLLIKAEAAINLSGAGAGDTEL-----NKIRLR 418

Query: 474 AGLNELPDMTQEEFRQTVKDERAMELCFEYT-RRFDLIRWGEYVKNMRALVTEAQSGNNW 532
           AGL     MT ++    +K ER  EL  E+  R  DL+RWG+        + +      W
Sbjct: 419 AGLGTKTGMTIDD----LKRERRNELAGEWADRHRDLVRWGDAQAAYAKPLHDFDGSVIW 474

Query: 533 TQGPTNVYTYFNISSTYNYFPIPDAEMSVNKDITQNNPGW 572
                N          ++ + +P  E+  +  + + N GW
Sbjct: 475 PARTFN-------PQVHDVWAVPQREIDNSAGVIKQNAGW 507