Pairwise Alignments

Query, 572 a.a., Outer membrane binding protein for chondroitin sulfate and hyaluronic acid (susD-like) (from data) from Bacteroides thetaiotaomicron VPI-5482

Subject, 518 a.a., RagB/SusD family nutrient uptake outer membrane protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  132 bits (333), Expect = 3e-35
 Identities = 139/571 (24%), Positives = 234/571 (40%), Gaps = 99/571 (17%)

Query: 22  FLDK-EPTKLTPENYFNTPAEANSFLTGIYA----ILSQPTFYGGDYMYLVAGDDLSHYG 76
           FLD+ +PT L+P +++  P  A + +  +YA    I +    Y  ++  L A   +    
Sbjct: 27  FLDETDPTNLSPSSFYTLPEHAEAGIAAVYAEIRFIGAGAGIYSNNWQMLDAPTGIQSTE 86

Query: 77  GSGRGPAST--GLICNNATTSDNAVTAFWYALYSGINRANMFLENIDKVNGFDAGVKEQY 134
            +     +    LI +      N     W   Y  I + N+ L+ +  +N  D   K++ 
Sbjct: 87  TAQNSDLNNLYSLIYDGTNLHVNQT---WNGFYKVIAQTNLVLDKVPGINPMDNAQKKRI 143

Query: 135 IAEARFLRAFYYFNLVECWGDVPF--KTVSTQSVTNLNIPRTDKQEIYDFIISEMADAAE 192
           + EA F+RA+ YF LV  WGDVP   K +++ +  N +  RT ++++Y  I+ ++  A  
Sbjct: 144 LGEASFIRAWAYFYLVRLWGDVPLITKPITSPNDPNFSPSRTPQEQVYKQIVDDLVTAEA 203

Query: 193 TGLKSASDLAYKPGRISQSTAWGILARVYLFRAGEHYREGRNATQAEKKDYFERASFYAQ 252
            GL          GR+S +     LA+VYL  AG+   +G              A++Y  
Sbjct: 204 AGLPFMD----ASGRVSTAAIKSELAKVYLTMAGQPLNKG--------------AAYY-- 243

Query: 253 KVMTAGHKLAANYWDPFIDMCSDKYNTTANESIWEAEFAGNNTSDTQAEGRIGNIIGLAG 312
                  KLAA+     ID       +T N ++     A     D + + ++ ++ G+  
Sbjct: 244 -------KLAADKAKEVIDY------STGNPALLGLFPAYGALHDAKNDNKVEHLFGIQY 290

Query: 313 PDLSSKSDVTGAKDPGYGYAFIYSTPKLYNLYVNNGDTKRFNWSIAPFEYKEAGGKNTGV 372
            D +           G+G     S   L+   V+  D    +   A F            
Sbjct: 291 NDAA-----------GFGNPLQSSYLPLHQPLVSKIDGIGTSIPTASF------------ 327

Query: 373 THREFEQGKLAEVMSQYGQQRGTYQYAD-----------DTEKTTATKNFSRMCGKYRRE 421
            +  +E G L        + R  Y + D           +  K    K+F  +       
Sbjct: 328 -YGSYEAGDLR------AKNRDGYFFTDYYTDGFKMPLINRGKPYVFKHFDLIANGTLGV 380

Query: 422 YEADKKDKNYTSINFPILRYADVLLMIAEAENEANNGPTTLAYQCMKEVRERAGLNELPD 481
               + D N      P +RYA+ LL+ AEA+N A+      AY  +  VR+RA L +L  
Sbjct: 381 EGTSRSDLN-----IPQIRYAETLLIYAEAQNRADGSANVAAYAAVNAVRKRAQLADLAG 435

Query: 482 MTQEEFRQTVKDERAMELCFEYTRRFDLIRWGEYVKNMRALVTEAQSGNNWTQGPTNVYT 541
           + Q +F + V  ER  ELC+E    FD++R       +R +  E  +G +   G  N   
Sbjct: 436 LGQTQFEEAVWRERWHELCYEGITWFDMVR-------LRKVYNETTNGFDNFVGHINKSV 488

Query: 542 YFNISSTYNYFPIPDAEMSVNKDITQNNPGW 572
              + + +  FPIP +E+  N ++T  NPG+
Sbjct: 489 NQPLQTKHLLFPIPTSEIKNNPNLTP-NPGY 518