Pairwise Alignments

Query, 572 a.a., Outer membrane binding protein for chondroitin sulfate and hyaluronic acid (susD-like) (from data) from Bacteroides thetaiotaomicron VPI-5482

Subject, 583 a.a., hypothetical protein from Pedobacter sp. GW460-11-11-14-LB5

 Score =  150 bits (379), Expect = 1e-40
 Identities = 166/614 (27%), Positives = 264/614 (42%), Gaps = 80/614 (13%)

Query: 5   KITIIALLA----GFSMVSCDFLDKEP-TKLTPENYFNTPAEANSFLTGIYAILSQPTFY 59
           KI+IIAL A     +S      LD+   T L  E  F       +FLT IY    Q   +
Sbjct: 4   KISIIALFALIIISYSCKKGGLLDESTLTTLNEETTFADSINTQAFLTRIY----QQVGF 59

Query: 60  GGDYMYLVAGDDLSHYGGSGRGPAST-------------GLICNNATTSDNAVTAFWYAL 106
             D  YL AG    H G +  G A               GL+  ++T SD   T  W   
Sbjct: 60  QYDIQYLDAG---GHSGAADEGVAGRYNGTQNSAVVIAFGLVSKSSTNSD--FTGMWSVP 114

Query: 107 YSGINRANMFLENIDKVNGFDAGVKEQYIAEARFLRAFYYFNLVECWGDVPFKTVSTQSV 166
           Y  I R N+ L+NI       A  K+  IAEAR+LRA+YYF L+  +G VP        +
Sbjct: 115 YQNIRRVNVLLQNIGGAP-LSAATKKGMIAEARYLRAWYYFLLIRAFGGVPLLGDKVYDI 173

Query: 167 T-NLNIPRTDKQEIYDFIISEMADAAE----TGLKSASDLAYKPGRISQSTAWGILARVY 221
           T + N+ R+  QE  ++I+SE  DAA+    T +   +      GRI+Q T  G+ +RV 
Sbjct: 174 TEDFNLKRSTYQECVNYIVSE-CDAAKADLPTNVTIVTSQPQNYGRITQGTCMGLKSRVL 232

Query: 222 LFRAGEHYREGRNATQAEKKDYFERASFYAQKVMTAGHKLAANYWDPFIDMCSDKYNTTA 281
           L+ A   +  G+ AT  E ++    A++  ++            W    D   D  N T 
Sbjct: 233 LYAASPLFNGGQLATGGEVRELTGYAAYDKER------------WKKAADAALDIIN-TG 279

Query: 282 NESIWEAEFAGNNTSDTQAEG-------RIGN---IIGLAGPDLSSKSDVTGAKDPGYGY 331
           N S++    A + T++    G       R+ +      + G     ++ +      G GY
Sbjct: 280 NYSLYVDNGAASGTTNRNGYGFYKVFQMRVNSEYLFAAMRGAQREFETFLLPQSRSG-GY 338

Query: 332 AFIYSTPKLYNLYVNNGDTKRFNWSIAPFE-YKEAGGKNTGVTHREFEQGKLAEVMSQYG 390
           AF  S   +    + NG  K  N + + ++       ++    +     G    +     
Sbjct: 339 AFTVSQQTVDKFPMING--KAINEAGSLYDPANPYANRDPRFANSVIYNGAPWILSGNNA 396

Query: 391 QQRGTYQYADDTEKTTATKNFSRMCGKYRREYEADKKDKNYTSINFPILRYADVLLMIAE 450
               TY  +  T+  +    F+   G + R+Y  +    N     + ++RYA++LL  AE
Sbjct: 397 APVNTYVGSGTTDAVSGPLGFN--TGYFPRKYLLENSTGNGERC-WGLIRYAEILLNYAE 453

Query: 451 AENEANNGPTTLAYQCMKEVRERAGLNE--------LPDMTQEEFRQTVKDERAMELCFE 502
           A NE  +GP    Y  ++++RERAG+            D TQ+E R  ++ ER +EL  E
Sbjct: 454 ALNE-YSGPVAEVYAQLRKIRERAGITAGTDGNYGIKADATQDEMRTIIQKERDVELFME 512

Query: 503 YTRRFDLIRWG----EYVKNMRALVTEAQSGNNWTQGPTNVYTYFNISSTYNYFPIPDAE 558
             R +D  RW     ++ K +R  V   ++GN ++    +V  + +  + Y  FP+  +E
Sbjct: 513 EHRMWDARRWKTAAVDFEKPIRG-VKITKTGNTYSYEYVDVREH-HFPANYGLFPMLASE 570

Query: 559 MSVNKDITQNNPGW 572
           ++ N  + Q NPGW
Sbjct: 571 IAKNTALIQ-NPGW 583